CsaV3_6G007850.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G007850.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ATP-dependent RNA helicase
Location	chr6 : 6297952 .. 6300116 (-)
Sequence length	609

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCCCTCCTTTTCTCTTTTCTTTGCTAAAATAATTTATTTGTTTATTTTAATCATCCGACGACGATAACACACATTCTTTCCCTTCTTCTTATTCTCATTCTTTCTTCCATTTAATCTCTTTTCTTATTCTTCTCCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCATCGAGATGAAATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAATCTTTCCGTAACTTCTCCCTCAACCACCGTCTATCCTCCGCCGCCCCCTCCTCCGCCGGAGTGCGGAGATCACCGTCTTCATTTTCTTCCTCTTCCTCCTCTTCCGATGACGAACCTCATCTTCCTCTTCATCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCCTTCTGGGAGCAATGTCTCGATTTGAAGGTCAGTATCCAGTATATCCACCATTACCCCCTACCTATCTCCTTTTTCTTTTTCTTTTTCTTTTTCTTCCTTCTGCTTCTACTTCTCTTCTTCTCTCGTTTTGATGTTTTTTGTCTTTTTCTCTCCTGATTCATCTTCCGATTCCTTCGTGTTTTTTTTTTTTCTTTTTTTTTTTTTTGTTTTCTTTTTCCTCTTCTTAACCTAACTTCATTTATTGCCAAAGGTCACATATGGCAGATCTTTGCAAATTCTGTTGTCTTGTACTTTTGATTATTAATTTCTTTTTTATGATTGTTTCAGATGGAGCTTTCGTTTCCTTCTTTAATTAATGCGTTTCTGTATTCATAAATTTGTCTTGATGATTAATGTTTTCCTTTTTCCATACATACTTCGTCCATAGGATTCGGATTCGGATTCCAAACCCTAGAATTAATTTATTTTATATTTCCTTTTATCGTCCGCCATTTTTTTCGCTTCTCTTTTCCTACAAAGCAACTTTTCTGGATTTTTGATTCCGCTTTCTTTGTTCTTTTGCTTTGATTTTGATTTCCCCTCGGGAACATTAAAATTAACTTTTCGATTCATTTTCTTTTGGATTTCTAGACAGGGGAAGTTTACTATAGAAACTGCCGAACCGGAATGAAGGTAAAAGAAGATCCGAGGACAGCGGTAGCACACAGCCGAGATTTATATTTGGAAGACGACGACGGAGAGGACGGTGATGAAAGTTCTTCAGACGGTGGAAGTGAGGAGTCGTGTTCTTCATCGTCGTACGGTGGTAGTAGACAGCAATATCCAGCGGAAAACGTGGAGGACGTACTGGTGGTGGCTGGATGCAAGAGATGCTTCATGTATTTCATGGTACCGAAACAGGTTGAAGATTGTCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGCTCCGACGAGAGTAATGGGTTCCCATGAACCACTTTATTTATTATTTTTGAGAAAACAAGAAATCAAAATCAAACTGTATTTGGGTTAAATTGATCTGACAAAATCATTGATTCTTTTTCTTTGGATTAATTTGGTGATTAGCAAAAGGCTAAATGGGGATTTAAATTTCTTTAATTAGCTCTATTTCTCTCTTTGTGAATGATCTGTTGTTCGTGTGTTCGTTGTTATTGATATGTAGACAAAAATTATAGAAAAACAAAAAGAAGAATTGAAATGAAAAGAATGTGAGAAAGAGTGCGGCCATGGATGATGGTATAAGGAGGAAGCTGATAGAGAGGGTATATGAATGGGATGGTCAACGACTCAAAGGAAGAAGAAGAAGAAGAAGAAGAAGGGAATAATATTTTGCTCGTGAAGACAGCGACTTGTTGCTTTCATGATTCCTCAACCCACACTGATTGAATCGTACGCAATTATTATTATTATTATTTTAACAACCCAAAAATTCAATCAATTTACTAATTCTTCTTTATATGATGATTAATTATGGGATTATCTAATTGAAACGGGTTAACCTTAGCCTTAATAAATGTCTAAATTAAAATGCACTATTAGAATTTCAATATAATATATAGTCTTCTTAACCCCTCTCATCTAACCTTCTATTTTTTGGTTTGCAACATTTGAGGTAAAAACAACCAACAATATGTAAAATCTTTAACTCTAAGAAACACAATAAAATATGAATTGATGAACCCTAACATCCAAACTATTTACACAAAATACAAAAATCTTTCAATTC

mRNA sequence

ATGAAATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAATCTTTCCGTAACTTCTCCCTCAACCACCGTCTATCCTCCGCCGCCCCCTCCTCCGCCGGAGTGCGGAGATCACCGTCTTCATTTTCTTCCTCTTCCTCCTCTTCCGATGACGAACCTCATCTTCCTCTTCATCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCCTTCTGGGAGCAATGTCTCGATTTGAAGACAGGGGAAGTTTACTATAGAAACTGCCGAACCGGAATGAAGGTAAAAGAAGATCCGAGGACAGCGGTAGCACACAGCCGAGATTTATATTTGGAAGACGACGACGGAGAGGACGGTGATGAAAGTTCTTCAGACGGTGGAAGTGAGGAGTCGTGTTCTTCATCGTCGTACGGTGGTAGTAGACAGCAATATCCAGCGGAAAACGTGGAGGACGTACTGGTGGTGGCTGGATGCAAGAGATGCTTCATGTATTTCATGGTACCGAAACAGGTTGAAGATTGTCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGCTCCGACGAGAGTAATGGGTTCCCATGA

Coding sequence (CDS)

ATGAAATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAATCTTTCCGTAACTTCTCCCTCAACCACCGTCTATCCTCCGCCGCCCCCTCCTCCGCCGGAGTGCGGAGATCACCGTCTTCATTTTCTTCCTCTTCCTCCTCTTCCGATGACGAACCTCATCTTCCTCTTCATCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCCTTCTGGGAGCAATGTCTCGATTTGAAGACAGGGGAAGTTTACTATAGAAACTGCCGAACCGGAATGAAGGTAAAAGAAGATCCGAGGACAGCGGTAGCACACAGCCGAGATTTATATTTGGAAGACGACGACGGAGAGGACGGTGATGAAAGTTCTTCAGACGGTGGAAGTGAGGAGTCGTGTTCTTCATCGTCGTACGGTGGTAGTAGACAGCAATATCCAGCGGAAAACGTGGAGGACGTACTGGTGGTGGCTGGATGCAAGAGATGCTTCATGTATTTCATGGTACCGAAACAGGTTGAAGATTGTCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGCTCCGACGAGAGTAATGGGTTCCCATGA

Protein sequence

MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPSSAGVRRSPSSFSSSSSSSDDEPHLPLHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEDDDGEDGDESSSDGGSEESCSSSSYGGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDESNGFP

Homology

[Close]

BLAST of CsaV3_6G007850.1 vs. NCBI nr
Match: XP_004140554.1 (PREDICTED: uncharacterized protein LOC101221916 [Cucumis sativus] >KGN46421.1 hypothetical protein Csa_6G091940 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
           HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX
Sbjct: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDESNGFP 203
           CPKCSSSRLVHFDRSDESNGFP
Sbjct: 181 CPKCSSSRLVHFDRSDESNGFP 202

[Close]

BLAST of CsaV3_6G007850.1 vs. NCBI nr
Match: XP_016902460.1 (PREDICTED: uncharacterized protein LOC103498882 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
           HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLY E 
Sbjct: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYSE- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED
Sbjct: 121 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDES 199
           CPKCSSSRLVHFDRSDE+
Sbjct: 181 CPKCSSSRLVHFDRSDET 197

[Close]

BLAST of CsaV3_6G007850.1 vs. NCBI nr
Match: XP_022953156.1 (uncharacterized protein LOC111455780 [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 1.9e-60
Identity = 165/202 (81.68%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           MKSPDMAAVTDSLEQSFR FSLNHRL SAAP     XXXXXXXXX         HLPL+Q
Sbjct: 1   MKSPDMAAVTDSLEQSFRTFSLNHRLLSAAPSAGVRXXXXXXXXXDER------HLPLNQ 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
           H+RFDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+V EDPRTA AHSRDLY  X
Sbjct: 61  HHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           VAGCKRCFMYFMVPKQVED
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGCKRCFMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDESNGFP 203
           CPKCSSSRLVHFDRS++SNGFP
Sbjct: 181 CPKCSSSRLVHFDRSEDSNGFP 196

[Close]

BLAST of CsaV3_6G007850.1 vs. NCBI nr
Match: XP_023547639.1 (uncharacterized protein LOC111806522 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 157/197 (79.70%), Postives = 162/197 (82.23%), Query Frame = 0


Query: 6   MAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQHNRFD 65
           MAAVTDSLEQSFR FSLNHRL SA P     XXXXXXXXX         HL L+QH+RFD
Sbjct: 1   MAAVTDSLEQSFRTFSLNHRLVSAPPSAGVRXXXXXXXXXDQR------HLSLNQHHRFD 60

Query: 66  TILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEXXXXXX 125
           T LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+V EDPRTA AHSRDLY  XXXXXX
Sbjct: 61  TTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSXXXXXXX 120

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCS 185
           XXXXXXXXXXXXXXXXXXXXXXXXX            AGCKRCFMYFMVPKQVEDCPKCS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCKRCFMYFMVPKQVEDCPKCS 180

Query: 186 SSRLVHFDRSDESNGFP 203
           SSRLVHFDRS++SNGFP
Sbjct: 181 SSRLVHFDRSEDSNGFP 191

[Close]

BLAST of CsaV3_6G007850.1 vs. NCBI nr
Match: XP_022991817.1 (uncharacterized protein LOC111488350 [Cucurbita maxima])

HSP 1 Score: 216.5 bits (550), Expect = 8.5e-53
Identity = 158/202 (78.22%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           MKSPDMAAVTDSLEQSFR FSLNHRL S AP          XXXXXXXXXXXX       
Sbjct: 1   MKSPDMAAVTDSLEQSFRTFSLNHRLVSPAP-----SAGVRXXXXXXXXXXXXXXXXXXX 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
              FDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+V EDPRTA AH RDLY  X
Sbjct: 61  XXXFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVTEDPRTAEAHGRDLYSXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            AGCKRCFMYFMVPKQVED
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCKRCFMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDESNGFP 203
           CPKCSSSRLVHFDRS++SNGFP
Sbjct: 181 CPKCSSSRLVHFDRSEDSNGFP 197

[Close]

BLAST of CsaV3_6G007850.1 vs. TAIR10
Match: AT2G33510.2 (unknown protein)

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-23
Identity = 106/216 (49.07%), Postives = 119/216 (55.09%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           MK+P+M  +T+SLE+S  N SLN R                                 H 
Sbjct: 1   MKAPNMETITESLEKSMMNCSLNDRRRRVVGDGFGRSSSNE-----------------HM 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLK---------------TGEVYYRNCRTGMKVKED 120
               D  LELNSH+SLP  WEQCLDLK               TGE+YY N + GM+VKED
Sbjct: 61  TPISDRTLELNSHLSLPCHWEQCLDLKVKLITTETSNSCRFRTGEIYYINWKNGMRVKED 120

Query: 121 PR---TAVAHSRDLY----LEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVED 180
           PR    A   S D Y      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        
Sbjct: 121 PRKVMNADPDSGDSYGTVCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 VLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDR 195
                GCK CFMYFMVPK VEDCPKC +++L+HFDR
Sbjct: 181 XXXXXGCKACFMYFMVPKLVEDCPKC-AAQLLHFDR 198

[Close]

BLAST of CsaV3_6G007850.1 vs. TAIR10
Match: AT1G28070.1 (unknown protein)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-21
Identity = 97/194 (50.00%), Postives = 117/194 (60.31%), Query Frame = 0


Query: 6   MAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQHNRFD 65
           MA +T+ LE+S +N SL  R SS                          H+P+      D
Sbjct: 1   MADITEYLERSMQNCSLIDRRSSMG----------------DGFGMSDEHIPIS-----D 60

Query: 66  TILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYL-----EX 125
             LEL+SH S+P   EQCLDLKTGE+YYR+  +GM+VKEDPR ++  SR  Y      E 
Sbjct: 61  RFLELSSHFSVPSHLEQCLDLKTGEIYYRSWNSGMRVKEDPRKSM--SRGNYADQSSGES 120

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 185
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             GCK C MYFMVPK  +D
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCKACLMYFMVPKLFKD 170

Query: 186 CPKCSSSRLVHFDR 195
           CPKC +++L+HFD+
Sbjct: 181 CPKC-ATQLLHFDQ 170

[Close]

BLAST of CsaV3_6G007850.1 vs. TrEMBL
Match: tr|A0A0A0KF89|A0A0A0KF89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091940 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 6.6e-78
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
           HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX
Sbjct: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDESNGFP 203
           CPKCSSSRLVHFDRSDESNGFP
Sbjct: 181 CPKCSSSRLVHFDRSDESNGFP 202

[Close]

BLAST of CsaV3_6G007850.1 vs. TrEMBL
Match: tr|A0A1S4E3A8|A0A1S4E3A8_CUCME (uncharacterized protein LOC103498882 OS=Cucumis melo OX=3656 GN=LOC103498882 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.4e-72
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
           HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLY E 
Sbjct: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYSE- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED
Sbjct: 121 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDES 199
           CPKCSSSRLVHFDRSDE+
Sbjct: 181 CPKCSSSRLVHFDRSDET 197

[Close]

BLAST of CsaV3_6G007850.1 vs. TrEMBL
Match: tr|A0A2N9I3E3|A0A2N9I3E3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47084 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.2e-32
Identity = 113/202 (55.94%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           M  P+MA +T SLE+SF+N SLN +  S +     XXXXXXXXXXXXXXXX   HLP   
Sbjct: 1   MSGPNMATITASLERSFQNCSLNQQTRSGS--GSRXXXXXXXXXXXXXXXXPDNHLP--- 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
               +T LELNS+ISLP  WEQCLDLKTGE+YY N R GMK K+DPRT   +S D Y E 
Sbjct: 61  --SSETTLELNSNISLPYHWEQCLDLKTGEIYYINWRNGMKAKDDPRTTAEYSGDFYSED 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
               XXXXXXXXX                    ++ + VLVVAGCK C MYFMVPKQVED
Sbjct: 121 DSSCXXXXXXXXXSPAPISSREQHYRVD---QKDHKDHVLVVAGCKSCLMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDESNGFP 203
           CPKC   +L+HFDRS+  NG P
Sbjct: 181 CPKC-CGQLLHFDRSE--NGSP 189

[Close]

BLAST of CsaV3_6G007850.1 vs. TrEMBL
Match: tr|A0A2I4GJ59|A0A2I4GJ59_9ROSI (uncharacterized protein LOC109008332 OS=Juglans regia OX=51240 GN=LOC109008339 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 119/202 (58.91%), Postives = 135/202 (66.83%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           M +P+MAA+T SLE+S +N SLNH+      XXXXXXXXXXXXXX         HLP   
Sbjct: 1   MTAPNMAAITASLERSLQNCSLNHQTXXXXXXXXXXXXXXXXXXXTPDN-----HLP--- 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
               DT LELNSH+SLP  WEQCLDLKTGE+YY N RTGMK KEDPR    +S D Y E 
Sbjct: 61  --NSDTTLELNSHMSLPYHWEQCLDLKTGEIYYINWRTGMKAKEDPRITAEYSGDFYSED 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
              XXXXXXXXXXXXXXXXXX            ++ + VLVVAGCK C MY MVPKQ ED
Sbjct: 121 ESSXXXXXXXXXXXXXXXXXXRVD-------QKDHKDHVLVVAGCKSCLMYVMVPKQAED 180

Query: 181 CPKCSSSRLVHFDRSDESNGFP 203
           CPKC S +L+HFD+ +  NG P
Sbjct: 181 CPKC-SGQLLHFDKCE--NGSP 182

[Close]

BLAST of CsaV3_6G007850.1 vs. TrEMBL
Match: tr|A0A2C9VF41|A0A2C9VF41_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G103100 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 127/202 (62.87%), Postives = 140/202 (69.31%), Query Frame = 0


Query: 1   MKSPDMAAVTDSLEQSFRNFSLNHRLSSAAPXXXXXXXXXXXXXXXXXXXXXXPHLPLHQ 60
           M  P+MA +T SLE+S +N SLNH  S          XXXXXXXXXXXXXXX P    H 
Sbjct: 1   MTPPNMATITASLERSLQNCSLNHHRSRGVLGVGERTXXXXXXXXXXXXXXXVPQ-QNHL 60

Query: 61  HNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEX 120
               DT LELNSH+SLP  WEQCLDLKTGE+YY N R GMK KEDPR    ++ D Y   
Sbjct: 61  LPTSDTTLELNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR-VTQYNGDFY--- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAENVEDVLVVAGCKRCFMYFMVPKQVED 180
                 XXXXXXXXXXXXXXXXXXXXXXXXY  +    VLVVAGCK CFMYFMVPKQVED
Sbjct: 121 -----SXXXXXXXXXXXXXXXXXXXXXXXXYRVQRENHVLVVAGCKSCFMYFMVPKQVED 180

Query: 181 CPKCSSSRLVHFDRSDESNGFP 203
           CPKC + +L+HFDRS+  NG P
Sbjct: 181 CPKC-NGQLLHFDRSE--NGSP 189

The following BLAST results are available for this feature:

BLAST of CsaV3_6G007850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140554.1	1.0e-77	100.00	PREDICTED: uncharacterized protein LOC101221916 [Cucumis sativus] >KGN46421.1 hy...	[more]
XP_016902460.1	2.2e-72	97.98	PREDICTED: uncharacterized protein LOC103498882 [Cucumis melo]	[more]
XP_022953156.1	1.9e-60	81.68	uncharacterized protein LOC111455780 [Cucurbita moschata]	[more]
XP_023547639.1	3.1e-55	79.70	uncharacterized protein LOC111806522 [Cucurbita pepo subsp. pepo]	[more]
XP_022991817.1	8.5e-53	78.22	uncharacterized protein LOC111488350 [Cucurbita maxima]	[more]

BLAST of CsaV3_6G007850.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33510.2	2.9e-23	49.07	unknown protein	[more]
AT1G28070.1	2.1e-21	50.00	unknown protein	[more]

BLAST of CsaV3_6G007850.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G007850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KF89\|A0A0A0KF89_CUCSA	6.6e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091940 PE=4 SV=1	[more]
tr\|A0A1S4E3A8\|A0A1S4E3A8_CUCME	1.4e-72	97.98	uncharacterized protein LOC103498882 OS=Cucumis melo OX=3656 GN=LOC103498882 PE=...	[more]
tr\|A0A2N9I3E3\|A0A2N9I3E3_FAGSY	4.2e-32	55.94	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47084 PE=4 SV=1	[more]
tr\|A0A2I4GJ59\|A0A2I4GJ59_9ROSI	1.2e-31	58.91	uncharacterized protein LOC109008332 OS=Juglans regia OX=51240 GN=LOC109008339 P...	[more]
tr\|A0A2C9VF41\|A0A2C9VF41_MANES	1.2e-31	62.87	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G103100 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036020	WW_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G007850	CsaV3_6G007850	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G007850.1.cds2	CsaV3_6G007850.1.cds2	CDS
CsaV3_6G007850.1.cds1	CsaV3_6G007850.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G007850.1.exon2	CsaV3_6G007850.1.exon2	exon
CsaV3_6G007850.1.exon1	CsaV3_6G007850.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G007850.1	CsaV3_6G007850.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.20.70.10		coord: 74..112 e-value: 8.4E-6 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..150
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 118..194 coord: 72..113
None	No IPR available	PANTHER	PTHR14791:SF29	PROTEIN KIBRA	coord: 118..194
None	No IPR available	PANTHER	PTHR14791:SF29	PROTEIN KIBRA	coord: 72..113
IPR036020	WW domain superfamily	SUPERFAMILY	SSF51045	WW domain	coord: 72..109