CsaV3_6G000980.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G000980.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 655857 .. 656809 (-)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGTGAGTTATACTGTTCTTTATTTTCTCTATCGTTTTTTGTTTTGAATTGGGTGTTGTGTAGTTCATGTTTCATTTCTCGAAATTCTCCAATTTGAAATGTGGAACTTGAATCGCGCCCTTTTGTTATCCAAATGCAAAATGGGATTTGAATCTTTGTTTTTTTTCTTTCTTATAAATTCAATGTGAATTGATGATCCTGAATAGTGCTGCGATTAATTTATATCCAACCCATCCTATCCTTTTATGAGTCAGTCTGGCAAGTTTCCATTTCTTTAGCTTTCTTTTGATTGGGTTTTTTTTTTTTTTTCATTGTTACTTGAATTTGGGTGAGTTACTCGTTGTCATGAACAATTTTCTATCCCGGACTTGAGAAGGTATTAGTTGCAATTTAAAGGCTTTAAACTCATGGAATGAGATCAAAATTACTCTCTATTCTGTTCTTAAAGACATTAACAGAAAAATGATGTTGGAATGCTATGAATCCATTTGTTATCAAGTACGGGTCTCGCTGCCCGGTCAGCGAGTCGGGTCCAGGGGCGACAATCTGCATCGTATGATAATGTTTTGTTGTTGAGTATATTTATTGCCTGGACATTCATAACGTCTCTCTAAAATGTGATTTTGATAATTCACTTTTACAGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

mRNA sequence

ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

Coding sequence (CDS)

ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

Protein sequence

MYKMAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFRTSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Homology
[Close]
BLAST of CsaV3_6G000980.1 vs. NCBI nr
Match: KGN45705.1 (hypothetical protein Csa_6G006900 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 5.9e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 4   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63
           MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR
Sbjct: 1   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 60

Query: 64  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 104
           TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Sbjct: 61  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 100

[Close]
BLAST of CsaV3_6G000980.1 vs. TrEMBL
Match: tr|A0A0A0K7J3|A0A0A0K7J3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.9e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 4   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63
           MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR
Sbjct: 1   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 60

Query: 64  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 104
           TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Sbjct: 61  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 100

The following BLAST results are available for this feature:
BLAST of CsaV3_6G000980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45705.15.9e-50100.00hypothetical protein Csa_6G006900 [Cucumis sativus][more]
BLAST of CsaV3_6G000980.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000980.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000980.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7J3|A0A0A0K7J3_CUCSA3.9e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G000980CsaV3_6G000980gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G000980.1.cds2CsaV3_6G000980.1.cds2CDS
CsaV3_6G000980.1.cds1CsaV3_6G000980.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G000980.1.exon2CsaV3_6G000980.1.exon2exon
CsaV3_6G000980.1.exon1CsaV3_6G000980.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G000980.1CsaV3_6G000980.1-proteinpolypeptide