CsaV3_6G000980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G000980
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 655857 .. 656809 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGTGAGTTATACTGTTCTTTATTTTCTCTATCGTTTTTTGTTTTGAATTGGGTGTTGTGTAGTTCATGTTTCATTTCTCGAAATTCTCCAATTTGAAATGTGGAACTTGAATCGCGCCCTTTTGTTATCCAAATGCAAAATGGGATTTGAATCTTTGTTTTTTTTCTTTCTTATAAATTCAATGTGAATTGATGATCCTGAATAGTGCTGCGATTAATTTATATCCAACCCATCCTATCCTTTTATGAGTCAGTCTGGCAAGTTTCCATTTCTTTAGCTTTCTTTTGATTGGGTTTTTTTTTTTTTTTCATTGTTACTTGAATTTGGGTGAGTTACTCGTTGTCATGAACAATTTTCTATCCCGGACTTGAGAAGGTATTAGTTGCAATTTAAAGGCTTTAAACTCATGGAATGAGATCAAAATTACTCTCTATTCTGTTCTTAAAGACATTAACAGAAAAATGATGTTGGAATGCTATGAATCCATTTGTTATCAAGTACGGGTCTCGCTGCCCGGTCAGCGAGTCGGGTCCAGGGGCGACAATCTGCATCGTATGATAATGTTTTGTTGTTGAGTATATTTATTGCCTGGACATTCATAACGTCTCTCTAAAATGTGATTTTGATAATTCACTTTTACAGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

mRNA sequence

ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

Coding sequence (CDS)

ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

Protein sequence

MYKMAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFRTSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Homology
[Close]
BLAST of CsaV3_6G000980 vs. NCBI nr
Match: KGN45705.1 (hypothetical protein Csa_6G006900 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 5.9e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 4   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63
           MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR
Sbjct: 1   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 60

Query: 64  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 104
           TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Sbjct: 61  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 100

[Close]
BLAST of CsaV3_6G000980 vs. TrEMBL
Match: tr|A0A0A0K7J3|A0A0A0K7J3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.9e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 4   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63
           MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR
Sbjct: 1   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 60

Query: 64  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 104
           TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Sbjct: 61  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 100

The following BLAST results are available for this feature:
BLAST of CsaV3_6G000980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45705.15.9e-50100.00hypothetical protein Csa_6G006900 [Cucumis sativus][more]
BLAST of CsaV3_6G000980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7J3|A0A0A0K7J3_CUCSA3.9e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G000980.1CsaV3_6G000980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G000980CmaCh08G008780Cucurbita maxima (Rimu)cmacucB1073
CsaV3_6G000980CmoCh08G008510Cucurbita moschata (Rifu)cmocucB1055
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G000980Cucumber (Gy14) v2cgybcucB152
CsaV3_6G000980Cucumber (Gy14) v2cgybcucB298
CsaV3_6G000980Cucumber (Gy14) v1cgycucB203
CsaV3_6G000980Cucurbita maxima (Rimu)cmacucB0440
CsaV3_6G000980Cucurbita moschata (Rifu)cmocucB0432
CsaV3_6G000980Cucurbita pepo (Zucchini)cpecucB0165
CsaV3_6G000980Cucurbita pepo (Zucchini)cpecucB0395
CsaV3_6G000980Wild cucumber (PI 183967)cpicucB189
CsaV3_6G000980Wild cucumber (PI 183967)cpicucB364
CsaV3_6G000980Bottle gourd (USVL1VR-Ls)cuclsiB418
CsaV3_6G000980Melon (DHL92) v3.5.1cucmeB430
CsaV3_6G000980Melon (DHL92) v3.5.1cucmeB511
CsaV3_6G000980Melon (DHL92) v3.6.1cucmedB420
CsaV3_6G000980Melon (DHL92) v3.6.1cucmedB499
CsaV3_6G000980Watermelon (Charleston Gray)cucwcgB502
CsaV3_6G000980Watermelon (97103) v1cucwmB565
CsaV3_6G000980Watermelon (97103) v2cucwmbB431
CsaV3_6G000980Watermelon (97103) v2cucwmbB492
CsaV3_6G000980Wax gourdcucwgoB555
CsaV3_6G000980Wax gourdcucwgoB560
CsaV3_6G000980Cucumber (Chinese Long) v3cuccucB151
CsaV3_6G000980Silver-seed gourdcarcucB0637
CsaV3_6G000980Silver-seed gourdcarcucB0650