CsaV3_5G030800.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G030800.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 25238934 .. 25239191 (-)
Sequence length	258

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

mRNA sequence

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

Coding sequence (CDS)

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

Protein sequence

MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFAEPPRRRNSEQMPIFIWRLMLAGEEE

Homology

[Close]

BLAST of CsaV3_5G030800.1 vs. NCBI nr
Match: KGN51728.1 (hypothetical protein Csa_5G593420 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 6.4e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60
          MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA
Sbjct: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60

Query: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 86
          EPPRRRNSEQMPIFIWRLMLAGEEE
Sbjct: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 85

[Close]

BLAST of CsaV3_5G030800.1 vs. TrEMBL
Match: tr|A0A0A0KQ33|A0A0A0KQ33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593420 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.2e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60
          MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA
Sbjct: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60

Query: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 86
          EPPRRRNSEQMPIFIWRLMLAGEEE
Sbjct: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 85

The following BLAST results are available for this feature:

BLAST of CsaV3_5G030800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51728.1	6.4e-42	100.00	hypothetical protein Csa_5G593420 [Cucumis sativus]	[more]

BLAST of CsaV3_5G030800.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G030800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G030800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQ33\|A0A0A0KQ33_CUCSA	4.2e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593420 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_5G030800	CsaV3_5G030800	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G030800.1.cds1	CsaV3_5G030800.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G030800.1.exon1	CsaV3_5G030800.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G030800.1	CsaV3_5G030800.1-protein	polypeptide