CsaV3_5G030800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G030800
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 25238934 .. 25239191 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

mRNA sequence

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

Coding sequence (CDS)

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

Protein sequence

MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFAEPPRRRNSEQMPIFIWRLMLAGEEE
Homology
[Close]
BLAST of CsaV3_5G030800 vs. NCBI nr
Match: KGN51728.1 (hypothetical protein Csa_5G593420 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 6.4e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60
          MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA
Sbjct: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60

Query: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 86
          EPPRRRNSEQMPIFIWRLMLAGEEE
Sbjct: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 85

[Close]
BLAST of CsaV3_5G030800 vs. TrEMBL
Match: tr|A0A0A0KQ33|A0A0A0KQ33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593420 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.2e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60
          MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA
Sbjct: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60

Query: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 86
          EPPRRRNSEQMPIFIWRLMLAGEEE
Sbjct: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 85

The following BLAST results are available for this feature:
BLAST of CsaV3_5G030800 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51728.16.4e-42100.00hypothetical protein Csa_5G593420 [Cucumis sativus][more]
BLAST of CsaV3_5G030800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G030800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G030800 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQ33|A0A0A0KQ33_CUCSA4.2e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593420 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G030800.1CsaV3_5G030800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G030800MELO3C011923Melon (DHL92) v3.5.1cucmeB381
CsaV3_5G030800MELO3C011923.2Melon (DHL92) v3.6.1cucmedB375
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G030800Watermelon (97103) v2cucwmbB398
CsaV3_5G030800Watermelon (97103) v2cucwmbB417
CsaV3_5G030800Wax gourdcucwgoB523
CsaV3_5G030800Cucumber (Chinese Long) v3cuccucB084
CsaV3_5G030800Silver-seed gourdcarcucB0274
CsaV3_5G030800Silver-seed gourdcarcucB0536
CsaV3_5G030800Cucumber (Gy14) v2cgybcucB083
CsaV3_5G030800Cucumber (Gy14) v2cgybcucB232
CsaV3_5G030800Cucumber (Gy14) v1cgycucB441
CsaV3_5G030800Cucurbita maxima (Rimu)cmacucB0495
CsaV3_5G030800Cucurbita maxima (Rimu)cmacucB0886
CsaV3_5G030800Cucurbita maxima (Rimu)cmacucB0948
CsaV3_5G030800Cucurbita moschata (Rifu)cmocucB0484
CsaV3_5G030800Cucurbita moschata (Rifu)cmocucB0875
CsaV3_5G030800Cucurbita moschata (Rifu)cmocucB0934
CsaV3_5G030800Cucurbita pepo (Zucchini)cpecucB0051
CsaV3_5G030800Cucurbita pepo (Zucchini)cpecucB0130
CsaV3_5G030800Cucurbita pepo (Zucchini)cpecucB0544
CsaV3_5G030800Wild cucumber (PI 183967)cpicucB105
CsaV3_5G030800Wild cucumber (PI 183967)cpicucB284
CsaV3_5G030800Bottle gourd (USVL1VR-Ls)cuclsiB393
CsaV3_5G030800Melon (DHL92) v3.5.1cucmeB402
CsaV3_5G030800Melon (DHL92) v3.6.1cucmedB395
CsaV3_5G030800Watermelon (Charleston Gray)cucwcgB415
CsaV3_5G030800Watermelon (Charleston Gray)cucwcgB431
CsaV3_5G030800Watermelon (97103) v1cucwmB399
CsaV3_5G030800Watermelon (97103) v1cucwmB428