CsaV3_5G003500.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G003500.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 2238507 .. 2238892 (+)
Sequence length198
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGTAAGTGGTTGTTTTTTGTTTTTTATTTTTGTTTTGGTTTAAGTTTGAGAAAAAAAAAATAGTAAATAGGTATGTTAATTTTGTGATTGTCAAGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGTAAGTCTTTGTTTTTATTTTTTTTATTTATTTTGGTTTGAGGTCGAAAAAAAATATTAAATATGTGTGTTAGTCTTTGTTGTTGTTGATCTAGGATCCGATTAG

mRNA sequence

ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGATCCGATTAG

Coding sequence (CDS)

ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGATCCGATTAG

Protein sequence

MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPLLARSD
Homology
[Close]
BLAST of CsaV3_5G003500.1 vs. NCBI nr
Match: KGN50171.1 (hypothetical protein Csa_5G157300 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60
          MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL
Sbjct: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60

Query: 61 LARSD 66
          LARSD
Sbjct: 61 LARSD 65

[Close]
BLAST of CsaV3_5G003500.1 vs. TrEMBL
Match: tr|A0A0A0KR16|A0A0A0KR16_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157300 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.8e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60
          MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL
Sbjct: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60

Query: 61 LARSD 66
          LARSD
Sbjct: 61 LARSD 65

The following BLAST results are available for this feature:
BLAST of CsaV3_5G003500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50171.11.5e-30100.00hypothetical protein Csa_5G157300 [Cucumis sativus][more]
BLAST of CsaV3_5G003500.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G003500.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G003500.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KR16|A0A0A0KR16_CUCSA9.8e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_5G003500CsaV3_5G003500gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_5G003500.1CsaV3_5G003500.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G003500.1.exon1CsaV3_5G003500.1.exon1exon
CsaV3_5G003500.1.exon2CsaV3_5G003500.1.exon2exon
CsaV3_5G003500.1.exon3CsaV3_5G003500.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G003500.1.cds1CsaV3_5G003500.1.cds1CDS
CsaV3_5G003500.1.cds2CsaV3_5G003500.1.cds2CDS
CsaV3_5G003500.1.cds3CsaV3_5G003500.1.cds3CDS