CsaV3_5G003500 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G003500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 2238507 .. 2238892 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGTAAGTGGTTGTTTTTTGTTTTTTATTTTTGTTTTGGTTTAAGTTTGAGAAAAAAAAAATAGTAAATAGGTATGTTAATTTTGTGATTGTCAAGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGTAAGTCTTTGTTTTTATTTTTTTTATTTATTTTGGTTTGAGGTCGAAAAAAAATATTAAATATGTGTGTTAGTCTTTGTTGTTGTTGATCTAGGATCCGATTAG

mRNA sequence

ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGATCCGATTAG

Coding sequence (CDS)

ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGATCCGATTAG

Protein sequence

MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPLLARSD
BLAST of CsaV3_5G003500 vs. NCBI nr
Match: KGN50171.1 (hypothetical protein Csa_5G157300 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60
          MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL
Sbjct: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60

Query: 61 LARSD 66
          LARSD
Sbjct: 61 LARSD 65

BLAST of CsaV3_5G003500 vs. TrEMBL
Match: tr|A0A0A0KR16|A0A0A0KR16_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157300 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.8e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60
          MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL
Sbjct: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60

Query: 61 LARSD 66
          LARSD
Sbjct: 61 LARSD 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50171.11.5e-30100.00hypothetical protein Csa_5G157300 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KR16|A0A0A0KR16_CUCSA9.8e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157300 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G003500.1CsaV3_5G003500.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G003500Cucumber (Chinese Long) v3cuccucB120
CsaV3_5G003500Cucumber (Chinese Long) v3cuccucB124
CsaV3_5G003500Cucumber (Chinese Long) v3cuccucB125
CsaV3_5G003500Silver-seed gourdcarcucB0525
CsaV3_5G003500Silver-seed gourdcarcucB0653
CsaV3_5G003500Silver-seed gourdcarcucB0906
CsaV3_5G003500Silver-seed gourdcarcucB0979
CsaV3_5G003500Cucumber (Gy14) v2cgybcucB131
CsaV3_5G003500Cucumber (Gy14) v2cgybcucB134
CsaV3_5G003500Cucumber (Gy14) v2cgybcucB135
CsaV3_5G003500Cucumber (Gy14) v2cgybcucB232
CsaV3_5G003500Cucumber (Gy14) v1cgycucB392
CsaV3_5G003500Cucumber (Gy14) v1cgycucB394
CsaV3_5G003500Cucumber (Gy14) v1cgycucB470
CsaV3_5G003500Cucumber (Gy14) v1cgycucB502
CsaV3_5G003500Cucumber (Gy14) v1cgycucB555
CsaV3_5G003500Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G003500Cucurbita maxima (Rimu)cmacucB0502
CsaV3_5G003500Cucurbita maxima (Rimu)cmacucB0730
CsaV3_5G003500Cucurbita maxima (Rimu)cmacucB0990
CsaV3_5G003500Cucurbita maxima (Rimu)cmacucB0991
CsaV3_5G003500Cucurbita moschata (Rifu)cmocucB0299
CsaV3_5G003500Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G003500Cucurbita moschata (Rifu)cmocucB0491
CsaV3_5G003500Cucurbita moschata (Rifu)cmocucB0718
CsaV3_5G003500Cucurbita moschata (Rifu)cmocucB0726
CsaV3_5G003500Cucurbita moschata (Rifu)cmocucB0974
CsaV3_5G003500Cucurbita moschata (Rifu)cmocucB0975
CsaV3_5G003500Cucurbita pepo (Zucchini)cpecucB0045
CsaV3_5G003500Cucurbita pepo (Zucchini)cpecucB0209
CsaV3_5G003500Cucurbita pepo (Zucchini)cpecucB0777
CsaV3_5G003500Cucurbita pepo (Zucchini)cpecucB0912
CsaV3_5G003500Cucurbita pepo (Zucchini)cpecucB1070
CsaV3_5G003500Cucurbita pepo (Zucchini)cpecucB1072
CsaV3_5G003500Wild cucumber (PI 183967)cpicucB164
CsaV3_5G003500Wild cucumber (PI 183967)cpicucB167
CsaV3_5G003500Wild cucumber (PI 183967)cpicucB169
CsaV3_5G003500Wild cucumber (PI 183967)cpicucB285
CsaV3_5G003500Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G003500Bottle gourd (USVL1VR-Ls)cuclsiB399
CsaV3_5G003500Bottle gourd (USVL1VR-Ls)cuclsiB403
CsaV3_5G003500Bottle gourd (USVL1VR-Ls)cuclsiB409
CsaV3_5G003500Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G003500Melon (DHL92) v3.5.1cucmeB410
CsaV3_5G003500Melon (DHL92) v3.5.1cucmeB412
CsaV3_5G003500Melon (DHL92) v3.5.1cucmeB415
CsaV3_5G003500Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G003500Melon (DHL92) v3.6.1cucmedB405
CsaV3_5G003500Melon (DHL92) v3.6.1cucmedB407
CsaV3_5G003500Melon (DHL92) v3.6.1cucmedB408
CsaV3_5G003500Watermelon (Charleston Gray)cucwcgB374
CsaV3_5G003500Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G003500Watermelon (Charleston Gray)cucwcgB416
CsaV3_5G003500Watermelon (97103) v1cucwmB433
CsaV3_5G003500Watermelon (97103) v1cucwmB429
CsaV3_5G003500Watermelon (97103) v2cucwmbB351
CsaV3_5G003500Watermelon (97103) v2cucwmbB372
CsaV3_5G003500Watermelon (97103) v2cucwmbB397
CsaV3_5G003500Watermelon (97103) v2cucwmbB400
CsaV3_5G003500Watermelon (97103) v2cucwmbB405
CsaV3_5G003500Wax gourdcucwgoB449
CsaV3_5G003500Wax gourdcucwgoB496