CsaV3_4G031250.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATGTTGAGTTCCACAATAATACTAAAACTTTCCAACTTTTCTGTTCTTGAAATGCAATAGAAACAAGGCAATAAAAGAAAAAAAAGAAAGAAAGAAATAAAGAAGTGGAGTAGTACACGCTCTATCTCATTCTAGTTCCACAAAATAATAAATGAGAAAAACAAAAATGGACAAGTCAAAAAGCAATCAATACATGATTCGATTTGACAGTCTTAAAAGAAAACGAAATTCCTTTACACCCACCACTCTCTAACCAAGTATGTGTGTATATATATATATGTCCATTACAAACAATGAAACTGTGAGAGGAAAAAAAAGATGCCCGAGAAGAAGAAAATGAAGGTAAAGAAAGGATGGTTAGCTGTGGAAGTAGGGTTGCAAGAGGAAGATGAAAGACTAGAAAGATTTGTAGTTCCAATATCTTATTTATATCATCCTCTATTCAAGAATCTTTTGGACAAAGCTCAAGAAATTTATGGCTACCATGCCAATGGTCCTCTTCGGCTTCCATGCTCAGTCGACGACTTTCTCCAACTCCGATGGCAGATCGAGAAAGAATCTGACCAACATATTGACAAACAAAATCATCATCGTCATCGTTATCGCCACCACCATCACCACTATCATCTTCCACTTGCTTTGTCTTTCCAGTCTTGTTGAGGAGAACTTTTGTTTAGATGGATGGGTTTAGGGTTAGAAAGATGTGAACCCTAATTCAAAAAACATGTGTGTGTATGTCTTAGCTTTCTTCTTGCTGTATATTTTTTAAAATTGGCAATGAAGATGGATTTGTGTTTTGACATAAAAAAAAAAAGTTTAATGAATTGGAGGTTTAGAATAACAATTTTTGTCGCTATGAATATATATTTTTTTTGTTATCATTAATTGTGGGGAGAGAATCTTTTTTCCAACCCTTCATTTGTGGGTGATTCTATAAAAAAGGTCAAAAGTAAACTAAACTTTATGCCCGCAATGAACACATTTGTAGAATAATAATGTAGCAGTACTATTTATATCATCGAATTTAAGTGGTTTGAACATTGAGCTAAAGGTGCTTTTTATTCGGGTTGTTTGGAGTATTTGACTATTTGTTAACCCAACCAGTATTTATACCAATAAACTTCATAACTTGGTGTTTAATGGATCAACCAGCAGCTACAACAGATAAACAACTTCAGCAGCATGCTCCAACTAATGCCTCCTACAATCAACCTCTACATCCAACTCCACTTATATCG ATGCCCGAGAAGAAGAAAATGAAGGTAAAGAAAGGATGGTTAGCTGTGGAAGTAGGGTTGCAAGAGGAAGATGAAAGACTAGAAAGATTTGTAGTTCCAATATCTTATTTATATCATCCTCTATTCAAGAATCTTTTGGACAAAGCTCAAGAAATTTATGGCTACCATGCCAATGGTCCTCTTCGGCTTCCATGCTCAGTCGACGACTTTCTCCAACTCCGATGGCAGATCGAGAAAGAATCTGACCAACATATTGACAAACAAAATCATCATCGTCATCGTTATCGCCACCACCATCACCACTATCATCTTCCACTTGCTTTGTCTTTCCAGTCTTGTTGA ATGCCCGAGAAGAAGAAAATGAAGGTAAAGAAAGGATGGTTAGCTGTGGAAGTAGGGTTGCAAGAGGAAGATGAAAGACTAGAAAGATTTGTAGTTCCAATATCTTATTTATATCATCCTCTATTCAAGAATCTTTTGGACAAAGCTCAAGAAATTTATGGCTACCATGCCAATGGTCCTCTTCGGCTTCCATGCTCAGTCGACGACTTTCTCCAACTCCGATGGCAGATCGAGAAAGAATCTGACCAACATATTGACAAACAAAATCATCATCGTCATCGTTATCGCCACCACCATCACCACTATCATCTTCCACTTGCTTTGTCTTTCCAGTCTTGTTGA MPEKKKMKVKKGWLAVEVGLQEEDERLERFVVPISYLYHPLFKNLLDKAQEIYGYHANGPLRLPCSVDDFLQLRWQIEKESDQHIDKQNHHRHRYRHHHHHYHLPLALSFQSC
BLAST of CsaV3_4G031250.1 vs. NCBI nr
Match: KGN54862.1 (SAUR family protein [Cucumis sativus]) HSP 1 Score: 187.2 bits (474), Expect = 3.1e-44 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. NCBI nr
Match: XP_022154927.1 (auxin-responsive protein SAUR32-like [Momordica charantia]) HSP 1 Score: 159.8 bits (403), Expect = 5.3e-36 Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. NCBI nr
Match: XP_002272614.1 (PREDICTED: auxin-responsive protein SAUR32-like [Vitis vinifera]) HSP 1 Score: 140.6 bits (353), Expect = 3.3e-30 Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. NCBI nr
Match: PON88812.1 (Small auxin-up RNA [Trema orientalis]) HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29 Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. NCBI nr
Match: PNX67771.1 (auxin-induced protein 6b-like [Trifolium pratense]) HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29 Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TAIR10
Match: AT5G53590.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 75.5 bits (184), Expect = 2.4e-14 Identity = 32/73 (43.84%), Postives = 54/73 (73.97%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TAIR10
Match: AT4G00880.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12 Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TAIR10
Match: AT3G61900.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 67.8 bits (164), Expect = 5.0e-12 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TAIR10
Match: AT2G46690.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11 Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TAIR10
Match: AT4G34800.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 63.5 bits (153), Expect = 9.4e-11 Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. Swiss-Prot
Match: sp|P33083|AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.4e-10 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. Swiss-Prot
Match: sp|Q9ZUZ3|SAU32_ARATH (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.4e-10 Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. Swiss-Prot
Match: sp|P33080|AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 4.9e-09 Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. Swiss-Prot
Match: sp|P33081|AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 8.4e-09 Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. Swiss-Prot
Match: sp|P32295|ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.4e-08 Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TrEMBL
Match: tr|A0A0A0L2M8|A0A0A0L2M8_CUCSA (SAUR family protein OS=Cucumis sativus OX=3659 GN=Csa_4G556180 PE=4 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.1e-44 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TrEMBL
Match: tr|A0A2P5ETC9|A0A2P5ETC9_9ROSA (Small auxin-up RNA OS=Trema orientalis OX=63057 GN=TorRG33x02_153270 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29 Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TrEMBL
Match: tr|A0A2K3KN80|A0A2K3KN80_TRIPR (Auxin-induced protein 6b-like OS=Trifolium pratense OX=57577 GN=L195_g055804 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 1.4e-29 Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TrEMBL
Match: tr|A0A2R6RDI2|A0A2R6RDI2_ACTCH (Auxin-responsive protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc08023 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 1.4e-29 Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 0
BLAST of CsaV3_4G031250.1 vs. TrEMBL
Match: tr|A0A2I4DN05|A0A2I4DN05_9ROSI (auxin-induced protein 6B-like OS=Juglans regia OX=51240 GN=LOC108981711 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29 Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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