CsaV3_4G031160.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCTCCCAATCACTTTCTCCTTCCAATGCTCTATTCGCCGCAACGGCAAGAGCAGTCTTGCCACCGACGGTCAACCGTTGCAATTCGTCCAACTCCGTTTGAGGCACTTCGGCCAATTGGTTCATACACCTTCCCAGCAAATCCTTCAACAAACTTCCCCCACTTTAATTTCCGATACTCTGATCCCTTTCTCTCTGTGGGAGCTTGAAGATCCACCTTTCATCTCCTACTTCTTCCTCTTTCGTTTTCTCTCTTCCTACGATATCTCCGCCGCCGTCTGTGACGCCATCTTCTACAATATTTCCTCCTTTGCTGGTCAAATATTATTGGCCGCCGATAGCAACATAAATGTCAACTTCCACATCATAGCCGATGTGGATATCGTGTACACGCACTGGGTGGACCTGGACCCAGCAGAAGATGCCCCGGCGGTAAGGAAAGGGGCGTCAACATCGGTGATTGAGAGGGTGATGAAGGAGAAATATGATGGGAATGGAGGGGAAGAGAAGGAAGGTGATGATCAATGCAGTGTTTGTTATGAACAACTGTATGGAAAAAGAGAGAATGAAAACGAAAAGGAAAAGGAAGTGAGCAGAATCCCATGCGGGCACATGTATCATAAGTCATGCATTCTCAAATGGCTTAAAATCAGCAATTCATGTCCTTTGTGCAGAAGGGAATTAGAAGAATAA ATGTCTCTCCCAATCACTTTCTCCTTCCAATGCTCTATTCGCCGCAACGGCAAGAGCAGTCTTGCCACCGACGGTCAACCGTTGCAATTCGTCCAACTCCGTTTGAGGCACTTCGGCCAATTGGTTCATACACCTTCCCAGCAAATCCTTCAACAAACTTCCCCCACTTTAATTTCCGATACTCTGATCCCTTTCTCTCTGTGGGAGCTTGAAGATCCACCTTTCATCTCCTACTTCTTCCTCTTTCGTTTTCTCTCTTCCTACGATATCTCCGCCGCCGTCTGTGACGCCATCTTCTACAATATTTCCTCCTTTGCTGGTCAAATATTATTGGCCGCCGATAGCAACATAAATGTCAACTTCCACATCATAGCCGATGTGGATATCGTGTACACGCACTGGGTGGACCTGGACCCAGCAGAAGATGCCCCGGCGGTAAGGAAAGGGGCGTCAACATCGGTGATTGAGAGGGTGATGAAGGAGAAATATGATGGGAATGGAGGGGAAGAGAAGGAAGGTGATGATCAATGCAGTGTTTGTTATGAACAACTAAGGGAATTAGAAGAATAA ATGTCTCTCCCAATCACTTTCTCCTTCCAATGCTCTATTCGCCGCAACGGCAAGAGCAGTCTTGCCACCGACGGTCAACCGTTGCAATTCGTCCAACTCCGTTTGAGGCACTTCGGCCAATTGGTTCATACACCTTCCCAGCAAATCCTTCAACAAACTTCCCCCACTTTAATTTCCGATACTCTGATCCCTTTCTCTCTGTGGGAGCTTGAAGATCCACCTTTCATCTCCTACTTCTTCCTCTTTCGTTTTCTCTCTTCCTACGATATCTCCGCCGCCGTCTGTGACGCCATCTTCTACAATATTTCCTCCTTTGCTGGTCAAATATTATTGGCCGCCGATAGCAACATAAATGTCAACTTCCACATCATAGCCGATGTGGATATCGTGTACACGCACTGGGTGGACCTGGACCCAGCAGAAGATGCCCCGGCGGTAAGGAAAGGGGCGTCAACATCGGTGATTGAGAGGGTGATGAAGGAGAAATATGATGGGAATGGAGGGGAAGAGAAGGAAGGTGATGATCAATGCAGTGTTTGTTATGAACAACTAAGGGAATTAGAAGAATAA MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQLRELEE
BLAST of CsaV3_4G031160.1 vs. NCBI nr
Match: KGN54851.1 (hypothetical protein Csa_4G551140 [Cucumis sativus]) HSP 1 Score: 367.9 bits (943), Expect = 2.1e-98 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. NCBI nr
Match: XP_011650219.1 (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus] >KGN63362.1 hypothetical protein Csa_2G432790 [Cucumis sativus]) HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62 Identity = 133/184 (72.28%), Postives = 146/184 (79.35%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. NCBI nr
Match: XP_023533113.1 (RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37 Identity = 96/187 (51.34%), Postives = 120/187 (64.17%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima]) HSP 1 Score: 154.8 bits (390), Expect = 2.9e-34 Identity = 90/187 (48.13%), Postives = 119/187 (63.64%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. NCBI nr
Match: XP_022947840.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]) HSP 1 Score: 153.7 bits (387), Expect = 6.4e-34 Identity = 91/187 (48.66%), Postives = 118/187 (63.10%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. TrEMBL
Match: tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 1.4e-98 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. TrEMBL
Match: tr|A0A0A0LRB0|A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 3.7e-62 Identity = 133/184 (72.28%), Postives = 146/184 (79.35%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. TrEMBL
Match: tr|A0A1S3CR16|A0A1S3CR16_CUCME (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC103503717 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30 Identity = 98/194 (50.52%), Postives = 120/194 (61.86%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. TrEMBL
Match: tr|A0A0A0LHI3|A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24 Identity = 90/194 (46.39%), Postives = 116/194 (59.79%), Query Frame = 0
BLAST of CsaV3_4G031160.1 vs. TrEMBL
Match: tr|A0A0A0LHS2|A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G130680 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08 Identity = 56/148 (37.84%), Postives = 79/148 (53.38%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|