CsaV3_4G025570.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G025570.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 15050815 .. 15051004 (+)
Sequence length165
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAGATGGAGGAGGTTGGCCTTGGCGCCGAGATATTCACGGTTGCAGTGATGACGGAAACAGGTAGCGGAGTAGGATTTTATGGGCCGGCGGTACGTCTTCTATTTTATGGGCCAGAGTACTGAAAAGCCCACAATACAAATTGCTCAATGGGCATGTACTATTTCAGAAGGAATTGGTTGCTAA

mRNA sequence

ATGGAACAGATGGAGGAGGTTGGCCTTGGCGCCGAGATATTCACGGTTGCAGTGATGACGGAAACAGGTAGCGGAGTAGGATTTTATGGGCCGGCGAGTACTGAAAAGCCCACAATACAAATTGCTCAATGGGCATGTACTATTTCAGAAGGAATTGGTTGCTAA

Coding sequence (CDS)

ATGGAACAGATGGAGGAGGTTGGCCTTGGCGCCGAGATATTCACGGTTGCAGTGATGACGGAAACAGGTAGCGGAGTAGGATTTTATGGGCCGGCGAGTACTGAAAAGCCCACAATACAAATTGCTCAATGGGCATGTACTATTTCAGAAGGAATTGGTTGCTAA

Protein sequence

MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC
Homology
[Close]
BLAST of CsaV3_4G025570.1 vs. NCBI nr
Match: KGN54307.1 (hypothetical protein Csa_4G303060 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 55
          MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC
Sbjct: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 54

[Close]
BLAST of CsaV3_4G025570.1 vs. TrEMBL
Match: tr|A0A0A0L138|A0A0A0L138_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303060 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 55
          MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC
Sbjct: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 54

The following BLAST results are available for this feature:
BLAST of CsaV3_4G025570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54307.12.8e-22100.00hypothetical protein Csa_4G303060 [Cucumis sativus][more]
BLAST of CsaV3_4G025570.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025570.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L138|A0A0A0L138_CUCSA1.8e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G025570CsaV3_4G025570gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G025570.1.exon1CsaV3_4G025570.1.exon1exon
CsaV3_4G025570.1.exon2CsaV3_4G025570.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G025570.1.cds1CsaV3_4G025570.1.cds1CDS
CsaV3_4G025570.1.cds2CsaV3_4G025570.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G025570.1CsaV3_4G025570.1-proteinpolypeptide