CsaV3_4G025570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G025570
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 15050815 .. 15051004 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAGATGGAGGAGGTTGGCCTTGGCGCCGAGATATTCACGGTTGCAGTGATGACGGAAACAGGTAGCGGAGTAGGATTTTATGGGCCGGCGGTACGTCTTCTATTTTATGGGCCAGAGTACTGAAAAGCCCACAATACAAATTGCTCAATGGGCATGTACTATTTCAGAAGGAATTGGTTGCTAA

mRNA sequence

ATGGAACAGATGGAGGAGGTTGGCCTTGGCGCCGAGATATTCACGGTTGCAGTGATGACGGAAACAGGTAGCGGAGTAGGATTTTATGGGCCGGCGAGTACTGAAAAGCCCACAATACAAATTGCTCAATGGGCATGTACTATTTCAGAAGGAATTGGTTGCTAA

Coding sequence (CDS)

ATGGAACAGATGGAGGAGGTTGGCCTTGGCGCCGAGATATTCACGGTTGCAGTGATGACGGAAACAGGTAGCGGAGTAGGATTTTATGGGCCGGCGAGTACTGAAAAGCCCACAATACAAATTGCTCAATGGGCATGTACTATTTCAGAAGGAATTGGTTGCTAA

Protein sequence

MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC
Homology
[Close]
BLAST of CsaV3_4G025570 vs. NCBI nr
Match: KGN54307.1 (hypothetical protein Csa_4G303060 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 55
          MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC
Sbjct: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 54

[Close]
BLAST of CsaV3_4G025570 vs. TrEMBL
Match: tr|A0A0A0L138|A0A0A0L138_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303060 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 55
          MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC
Sbjct: 1  MEQMEEVGLGAEIFTVAVMTETGSGVGFYGPASTEKPTIQIAQWACTISEGIGC 54

The following BLAST results are available for this feature:
BLAST of CsaV3_4G025570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54307.12.8e-22100.00hypothetical protein Csa_4G303060 [Cucumis sativus][more]
BLAST of CsaV3_4G025570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L138|A0A0A0L138_CUCSA1.8e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G025570.1CsaV3_4G025570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G025570Watermelon (97103) v2cucwmbB275
CsaV3_4G025570Watermelon (97103) v2cucwmbB307
CsaV3_4G025570Wax gourdcucwgoB365
CsaV3_4G025570Wax gourdcucwgoB397
CsaV3_4G025570Cucumber (Chinese Long) v3cuccucB116
CsaV3_4G025570Cucumber (Chinese Long) v3cuccucB172
CsaV3_4G025570Silver-seed gourdcarcucB0183
CsaV3_4G025570Silver-seed gourdcarcucB0592
CsaV3_4G025570Silver-seed gourdcarcucB0614
CsaV3_4G025570Silver-seed gourdcarcucB1042
CsaV3_4G025570Cucumber (Gy14) v2cgybcucB128
CsaV3_4G025570Cucumber (Gy14) v2cgybcucB171
CsaV3_4G025570Cucumber (Gy14) v1cgycucB057
CsaV3_4G025570Cucumber (Gy14) v1cgycucB282
CsaV3_4G025570Cucurbita maxima (Rimu)cmacucB0301
CsaV3_4G025570Cucurbita maxima (Rimu)cmacucB0797
CsaV3_4G025570Cucurbita maxima (Rimu)cmacucB0988
CsaV3_4G025570Cucurbita maxima (Rimu)cmacucB1016
CsaV3_4G025570Cucurbita moschata (Rifu)cmocucB0294
CsaV3_4G025570Cucurbita moschata (Rifu)cmocucB0781
CsaV3_4G025570Cucurbita moschata (Rifu)cmocucB0972
CsaV3_4G025570Cucurbita moschata (Rifu)cmocucB0999
CsaV3_4G025570Cucurbita pepo (Zucchini)cpecucB0075
CsaV3_4G025570Cucurbita pepo (Zucchini)cpecucB0600
CsaV3_4G025570Cucurbita pepo (Zucchini)cpecucB0611
CsaV3_4G025570Cucurbita pepo (Zucchini)cpecucB0771
CsaV3_4G025570Cucurbita pepo (Zucchini)cpecucB1066
CsaV3_4G025570Wild cucumber (PI 183967)cpicucB159
CsaV3_4G025570Wild cucumber (PI 183967)cpicucB212
CsaV3_4G025570Bottle gourd (USVL1VR-Ls)cuclsiB272
CsaV3_4G025570Bottle gourd (USVL1VR-Ls)cuclsiB298
CsaV3_4G025570Melon (DHL92) v3.5.1cucmeB292
CsaV3_4G025570Melon (DHL92) v3.5.1cucmeB327
CsaV3_4G025570Melon (DHL92) v3.6.1cucmedB284
CsaV3_4G025570Melon (DHL92) v3.6.1cucmedB320
CsaV3_4G025570Watermelon (Charleston Gray)cucwcgB281
CsaV3_4G025570Watermelon (Charleston Gray)cucwcgB318
CsaV3_4G025570Watermelon (97103) v1cucwmB301
CsaV3_4G025570Watermelon (97103) v1cucwmB355