CsaV3_4G013500.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G013500.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 9845345 .. 9845979 (+)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGGTAAATAACTACTAGCTTCTTCCAGATCAAGTTTGCTTGTGGTGACTTCTGATAGCATGAGTTTTGTGTTATTCAATTGGGAGTTGATGAAGAAGAAGAGAAAGTTATAGAGGTTTCTTTCTGTTTGTCTCCTAGTTGGGTTATTGAATGAGAATCTGAGTTGGAAAGTGTGGCAAATAAGAGAAAGATGCACAAAGGCAAGGTTGGCTTGGATTACTGTGCAAGTTTATTGAGAATATCTTGTTCTTATTTGTCTGTTGATGTCACTCATATTAATATATAAGATATATATATAGTTAGACTAGGTTCTCATGATTCTAGTGAAACAAAGATTCTTTTTGACAATTCTTATTCAATTTGATTATAGTGTTATTTGGGAGGCACTTTGCCTATTTTGGTCAGCTCTTTTCTACACTTTGATTGTGCAGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

mRNA sequence

ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

Coding sequence (CDS)

ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

Protein sequence

MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGLWKLLSQQL
Homology
[Close]
BLAST of CsaV3_4G013500.1 vs. NCBI nr
Match: KGN53963.1 (hypothetical protein Csa_4G194800 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.7e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60
          MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL
Sbjct: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60

Query: 61 WKLLSQQL 69
          WKLLSQQL
Sbjct: 61 WKLLSQQL 68

[Close]
BLAST of CsaV3_4G013500.1 vs. TrEMBL
Match: tr|A0A0A0KWR2|A0A0A0KWR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194800 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60
          MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL
Sbjct: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60

Query: 61 WKLLSQQL 69
          WKLLSQQL
Sbjct: 61 WKLLSQQL 68

The following BLAST results are available for this feature:
BLAST of CsaV3_4G013500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53963.15.7e-33100.00hypothetical protein Csa_4G194800 [Cucumis sativus][more]
BLAST of CsaV3_4G013500.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G013500.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G013500.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWR2|A0A0A0KWR2_CUCSA3.8e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G013500CsaV3_4G013500gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G013500.1.exon1CsaV3_4G013500.1.exon1exon
CsaV3_4G013500.1.exon2CsaV3_4G013500.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G013500.1.cds1CsaV3_4G013500.1.cds1CDS
CsaV3_4G013500.1.cds2CsaV3_4G013500.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G013500.1CsaV3_4G013500.1-proteinpolypeptide