CsaV3_4G013500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G013500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 9845345 .. 9845979 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGGTAAATAACTACTAGCTTCTTCCAGATCAAGTTTGCTTGTGGTGACTTCTGATAGCATGAGTTTTGTGTTATTCAATTGGGAGTTGATGAAGAAGAAGAGAAAGTTATAGAGGTTTCTTTCTGTTTGTCTCCTAGTTGGGTTATTGAATGAGAATCTGAGTTGGAAAGTGTGGCAAATAAGAGAAAGATGCACAAAGGCAAGGTTGGCTTGGATTACTGTGCAAGTTTATTGAGAATATCTTGTTCTTATTTGTCTGTTGATGTCACTCATATTAATATATAAGATATATATATAGTTAGACTAGGTTCTCATGATTCTAGTGAAACAAAGATTCTTTTTGACAATTCTTATTCAATTTGATTATAGTGTTATTTGGGAGGCACTTTGCCTATTTTGGTCAGCTCTTTTCTACACTTTGATTGTGCAGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

mRNA sequence

ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

Coding sequence (CDS)

ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

Protein sequence

MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGLWKLLSQQL
Homology
[Close]
BLAST of CsaV3_4G013500 vs. NCBI nr
Match: KGN53963.1 (hypothetical protein Csa_4G194800 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.7e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60
          MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL
Sbjct: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60

Query: 61 WKLLSQQL 69
          WKLLSQQL
Sbjct: 61 WKLLSQQL 68

[Close]
BLAST of CsaV3_4G013500 vs. TrEMBL
Match: tr|A0A0A0KWR2|A0A0A0KWR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194800 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60
          MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL
Sbjct: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60

Query: 61 WKLLSQQL 69
          WKLLSQQL
Sbjct: 61 WKLLSQQL 68

The following BLAST results are available for this feature:
BLAST of CsaV3_4G013500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53963.15.7e-33100.00hypothetical protein Csa_4G194800 [Cucumis sativus][more]
BLAST of CsaV3_4G013500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G013500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G013500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWR2|A0A0A0KWR2_CUCSA3.8e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G013500.1CsaV3_4G013500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G013500Silver-seed gourdcarcucB0313
CsaV3_4G013500Silver-seed gourdcarcucB0662
CsaV3_4G013500Cucumber (Gy14) v2cgybcucB171
CsaV3_4G013500Cucumber (Gy14) v1cgycucB012
CsaV3_4G013500Cucurbita maxima (Rimu)cmacucB0792
CsaV3_4G013500Cucurbita maxima (Rimu)cmacucB1017
CsaV3_4G013500Cucurbita moschata (Rifu)cmocucB0774
CsaV3_4G013500Cucurbita moschata (Rifu)cmocucB1000
CsaV3_4G013500Cucurbita pepo (Zucchini)cpecucB0085
CsaV3_4G013500Cucurbita pepo (Zucchini)cpecucB0612
CsaV3_4G013500Wild cucumber (PI 183967)cpicucB213
CsaV3_4G013500Bottle gourd (USVL1VR-Ls)cuclsiB280
CsaV3_4G013500Melon (DHL92) v3.5.1cucmeB328
CsaV3_4G013500Melon (DHL92) v3.6.1cucmedB321
CsaV3_4G013500Watermelon (Charleston Gray)cucwcgB320
CsaV3_4G013500Watermelon (97103) v1cucwmB356
CsaV3_4G013500Watermelon (97103) v2cucwmbB309
CsaV3_4G013500Wax gourdcucwgoB410