CsaV3_3G039820.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G039820.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 32710547 .. 32712966 (+)
Sequence length186
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACCTGAGTTGTCTAGTCCTTGGAGTTCTTTACCTAGCACAACATCCGAGAGAGAGAAAAAAAAGAGAGCCAGTTAGGTCAGGTAAAATGCGTGCCCAGGTATTAGAGCTTGAGTGGAGTGGGGAACCTCTCTCCTTTTCTAGCCTAAGAAAAACCCGACCCACCTAGTCCTTAAAGTTCTTCACCCAGCACAGTAACCAACCGGTATAGAGAGAAAAAAAGATAGAGCCAATGGGAAAATTATTCAACGGAACGGTGTGATTGCATCTTTGCAGGATTCGTTGAGGGCTCATCAACCGTCTGTTGCGTCCTAATGATGTAAGTTTGATATTTGTTGATAACGAATAATGTGATTGAGAAGCATTTCTAATGCTGGTACACCAGTTTCCCGACTTCAAGGCATTCCCTTACCCGTTTCCTAACATCTAGGCTGTAGCATAGACAACTTTTCCATTAAAGGAAAAAAAAGAGAAGAAGAAGAATCCTTCAATATCGTTTTGTGTAAGGCACTCGAAATCCTAGATTGTGTTCAATACGATTCACAGCTAAGGCAGTATAACATGAGTAGAAAATTGTTAGTTAAGGAATATTTGTAAGAATTTCCGCACAGCAAATTTCATTGAATTTTGTTGCCTATTGTGAAGGGAAAAGACCTACCCTACATATTTTGGCAACAAAATTTTGAAGTTCATGATGCCTTGAAGTTCTTAATTCATTATGTTTGTTGGAGTTGAATACATAATATGAAATTTGAAATGGCGTCATTAAAATATGCCTCTGTTGTAATTTTAAGGAGGTTCGACATTTTTCCCCTTATTCTTTTGCATGAATAAAATGTTTGCTATCTGTATGCGGCATCTCTTGAGGAAGTTGAACCTTGGAAACTTGACTTGGCATCTTGCTATCTGCTTGAGGTGTTTATGGGGCTTATATTCACGACTAAGCATATAATACATCTACAAGTTCATGGTCTGGCCTAACATAAAAAGAATAGCCTTGGAATGACAATAAATCTATTTACTTTGAAGTTCTGAAGTTGTTAAATATGCAGATCAAGCGAAGTTTAATAAATTGGCTGCATTGTGCATTCCAAAATCAAAGATATGCTTTATAACTTGTGAAAGAAAGTTAAGCGCCTCGTGCTCACTAATCAATTTTACAGGTAAAATACTTACCAACCGAATATCTTCAAGGAGTGAGTTGGCACCAGCACAAGCATATTATTGCATTCATATCTGGGACGAATCAAGTGTTGTTCGTGACTATGAAAATGCAGGTCATCAAATCTAGTTCAATGTATGATTTGGTTAAAATTTTGTAATCTTTATTTTTGTGTAGATATACAGAAGTAGGTTTATTGTTTTTCTGATATTTTTATTTGTATATAGAACTTGCATTAGTTCATTTCATCTAAAAATTACTTGTTCAATTTCTATCAAATAATGTGGATTTTTTTCACTCTCTGGACAGAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAGCAAGTACCTTAGAGCTGCAATCTTATCATATAAAATAAGCACTATAGATCTTAGAACTTAACAGGATAAAATCATTTCTCACAAGAATGTTTGCTGTACATTAGCGTTATATTTTAACTTGACTTGAAATCCCTGGACTGAATGTTCTTTCAGAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGAGACCTGGTGCCATGTCTTTCTTAGGATCATTCTCAAGAGGCTTCGGGGTTCGATATACGCTAGTTGATTTTCTTCGAAGCCATGATGAACAGATTAGTGCCCTGTCATGGAGTTCGGATGGAAGATATCCAAATCAATTAACAAATTTTAGTCCTTTGCATGATAGTTGAATTGATGGTTGGATGATAGTGCAAACCCCTTTCTCTGTGGAAGAATTCATCAAATGATTTTCTTTGATTATACTTGCTGACAATATTTTACTTGCTATATTTTTATTGTTCTTTTTATGTTGTCTCCTCACCGAAGTATTTCAACCTGATACTAGAGATTTCCTTTAACTCCTTAGCACATATCTCGCATCTGCTACTTATGAGAGCTCTTCTTTTACCATTTGGGATGTGGCTCAAGGTATGTCAAAGGCTAATCTTCTTAGTTATCATTGATAAGTAGATGGTATTTTTTTTAAGAATAGTACTAATGATAGAGAAAATGCTTTCGTTAGTAAGACATATTGATTTTAATTTTTTCAAGTTTCTGCAGATCTGAAAGAGAAACTATCTGCTGCCACAGAAGAGGTTGGTGTCTTATGTGATACGTCAGTCAAACACATATATAACCATACTATAAACATTTGGATTA

mRNA sequence

ATGAAAATGCAGGTCATCAAATCTAGTTCAATAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGA

Coding sequence (CDS)

ATGAAAATGCAGGTCATCAAATCTAGTTCAATAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGA

Protein sequence

MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHAKVEFVYGLLLSLEMMLP
Homology
[Close]
BLAST of CsaV3_3G039820.1 vs. NCBI nr
Match: KGN59405.1 (hypothetical protein Csa_3G816670 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 45
          MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA
Sbjct: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 44

[Close]
BLAST of CsaV3_3G039820.1 vs. TrEMBL
Match: tr|A0A0A0LBK3|A0A0A0LBK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816670 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 45
          MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA
Sbjct: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 44

The following BLAST results are available for this feature:
BLAST of CsaV3_3G039820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59405.17.4e-16100.00hypothetical protein Csa_3G816670 [Cucumis sativus][more]
BLAST of CsaV3_3G039820.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039820.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039820.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBK3|A0A0A0LBK3_CUCSA4.9e-16100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G039820CsaV3_3G039820gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G039820.1CsaV3_3G039820.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G039820.1.exon1CsaV3_3G039820.1.exon1exon
CsaV3_3G039820.1.exon2CsaV3_3G039820.1.exon2exon
CsaV3_3G039820.1.exon3CsaV3_3G039820.1.exon3exon
CsaV3_3G039820.1.exon4CsaV3_3G039820.1.exon4exon
CsaV3_3G039820.1.exon5CsaV3_3G039820.1.exon5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G039820.1.cds2CsaV3_3G039820.1.cds2CDS
CsaV3_3G039820.1.cds3CsaV3_3G039820.1.cds3CDS
CsaV3_3G039820.1.cds4CsaV3_3G039820.1.cds4CDS