CsaV3_3G039820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G039820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 32710547 .. 32712966 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACCTGAGTTGTCTAGTCCTTGGAGTTCTTTACCTAGCACAACATCCGAGAGAGAGAAAAAAAAGAGAGCCAGTTAGGTCAGGTAAAATGCGTGCCCAGGTATTAGAGCTTGAGTGGAGTGGGGAACCTCTCTCCTTTTCTAGCCTAAGAAAAACCCGACCCACCTAGTCCTTAAAGTTCTTCACCCAGCACAGTAACCAACCGGTATAGAGAGAAAAAAAGATAGAGCCAATGGGAAAATTATTCAACGGAACGGTGTGATTGCATCTTTGCAGGATTCGTTGAGGGCTCATCAACCGTCTGTTGCGTCCTAATGATGTAAGTTTGATATTTGTTGATAACGAATAATGTGATTGAGAAGCATTTCTAATGCTGGTACACCAGTTTCCCGACTTCAAGGCATTCCCTTACCCGTTTCCTAACATCTAGGCTGTAGCATAGACAACTTTTCCATTAAAGGAAAAAAAAGAGAAGAAGAAGAATCCTTCAATATCGTTTTGTGTAAGGCACTCGAAATCCTAGATTGTGTTCAATACGATTCACAGCTAAGGCAGTATAACATGAGTAGAAAATTGTTAGTTAAGGAATATTTGTAAGAATTTCCGCACAGCAAATTTCATTGAATTTTGTTGCCTATTGTGAAGGGAAAAGACCTACCCTACATATTTTGGCAACAAAATTTTGAAGTTCATGATGCCTTGAAGTTCTTAATTCATTATGTTTGTTGGAGTTGAATACATAATATGAAATTTGAAATGGCGTCATTAAAATATGCCTCTGTTGTAATTTTAAGGAGGTTCGACATTTTTCCCCTTATTCTTTTGCATGAATAAAATGTTTGCTATCTGTATGCGGCATCTCTTGAGGAAGTTGAACCTTGGAAACTTGACTTGGCATCTTGCTATCTGCTTGAGGTGTTTATGGGGCTTATATTCACGACTAAGCATATAATACATCTACAAGTTCATGGTCTGGCCTAACATAAAAAGAATAGCCTTGGAATGACAATAAATCTATTTACTTTGAAGTTCTGAAGTTGTTAAATATGCAGATCAAGCGAAGTTTAATAAATTGGCTGCATTGTGCATTCCAAAATCAAAGATATGCTTTATAACTTGTGAAAGAAAGTTAAGCGCCTCGTGCTCACTAATCAATTTTACAGGTAAAATACTTACCAACCGAATATCTTCAAGGAGTGAGTTGGCACCAGCACAAGCATATTATTGCATTCATATCTGGGACGAATCAAGTGTTGTTCGTGACTATGAAAATGCAGGTCATCAAATCTAGTTCAATGTATGATTTGGTTAAAATTTTGTAATCTTTATTTTTGTGTAGATATACAGAAGTAGGTTTATTGTTTTTCTGATATTTTTATTTGTATATAGAACTTGCATTAGTTCATTTCATCTAAAAATTACTTGTTCAATTTCTATCAAATAATGTGGATTTTTTTCACTCTCTGGACAGAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAGCAAGTACCTTAGAGCTGCAATCTTATCATATAAAATAAGCACTATAGATCTTAGAACTTAACAGGATAAAATCATTTCTCACAAGAATGTTTGCTGTACATTAGCGTTATATTTTAACTTGACTTGAAATCCCTGGACTGAATGTTCTTTCAGAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGAGACCTGGTGCCATGTCTTTCTTAGGATCATTCTCAAGAGGCTTCGGGGTTCGATATACGCTAGTTGATTTTCTTCGAAGCCATGATGAACAGATTAGTGCCCTGTCATGGAGTTCGGATGGAAGATATCCAAATCAATTAACAAATTTTAGTCCTTTGCATGATAGTTGAATTGATGGTTGGATGATAGTGCAAACCCCTTTCTCTGTGGAAGAATTCATCAAATGATTTTCTTTGATTATACTTGCTGACAATATTTTACTTGCTATATTTTTATTGTTCTTTTTATGTTGTCTCCTCACCGAAGTATTTCAACCTGATACTAGAGATTTCCTTTAACTCCTTAGCACATATCTCGCATCTGCTACTTATGAGAGCTCTTCTTTTACCATTTGGGATGTGGCTCAAGGTATGTCAAAGGCTAATCTTCTTAGTTATCATTGATAAGTAGATGGTATTTTTTTTAAGAATAGTACTAATGATAGAGAAAATGCTTTCGTTAGTAAGACATATTGATTTTAATTTTTTCAAGTTTCTGCAGATCTGAAAGAGAAACTATCTGCTGCCACAGAAGAGGTTGGTGTCTTATGTGATACGTCAGTCAAACACATATATAACCATACTATAAACATTTGGATTA

mRNA sequence

ATGAAAATGCAGGTCATCAAATCTAGTTCAATAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGA

Coding sequence (CDS)

ATGAAAATGCAGGTCATCAAATCTAGTTCAATAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGA

Protein sequence

MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHAKVEFVYGLLLSLEMMLP
Homology
[Close]
BLAST of CsaV3_3G039820 vs. NCBI nr
Match: KGN59405.1 (hypothetical protein Csa_3G816670 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 45
          MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA
Sbjct: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 44

[Close]
BLAST of CsaV3_3G039820 vs. TrEMBL
Match: tr|A0A0A0LBK3|A0A0A0LBK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816670 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 45
          MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA
Sbjct: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 44

The following BLAST results are available for this feature:
BLAST of CsaV3_3G039820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59405.17.4e-16100.00hypothetical protein Csa_3G816670 [Cucumis sativus][more]
BLAST of CsaV3_3G039820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBK3|A0A0A0LBK3_CUCSA4.9e-16100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G039820.1CsaV3_3G039820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G039820Silver-seed gourdcarcucB0178
CsaV3_3G039820Silver-seed gourdcarcucB0279
CsaV3_3G039820Cucumber (Gy14) v2cgybcucB117
CsaV3_3G039820Cucumber (Gy14) v1cgycucB523
CsaV3_3G039820Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G039820Cucurbita maxima (Rimu)cmacucB0791
CsaV3_3G039820Cucurbita maxima (Rimu)cmacucB0976
CsaV3_3G039820Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G039820Cucurbita moschata (Rifu)cmocucB0962
CsaV3_3G039820Cucurbita pepo (Zucchini)cpecucB0072
CsaV3_3G039820Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G039820Cucurbita pepo (Zucchini)cpecucB0761
CsaV3_3G039820Cucurbita pepo (Zucchini)cpecucB1060
CsaV3_3G039820Wild cucumber (PI 183967)cpicucB145
CsaV3_3G039820Bottle gourd (USVL1VR-Ls)cuclsiB182
CsaV3_3G039820Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G039820Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G039820Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G039820Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G039820Watermelon (97103) v1cucwmB208
CsaV3_3G039820Watermelon (97103) v2cucwmbB187
CsaV3_3G039820Wax gourdcucwgoB227
CsaV3_3G039820Wax gourdcucwgoB338