CsaV3_3G039370.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G039370.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 32352497 .. 32352937 (+)
Sequence length	441

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

mRNA sequence

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

Coding sequence (CDS)

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

Protein sequence

MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEKSGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIFLFVFVMMREKGNGEDEDRRERNWAFI

Homology

[Close]

BLAST of CsaV3_3G039370.1 vs. NCBI nr
Match: KGN59358.1 (hypothetical protein Csa_3G812790 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 3.1e-44
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60
           MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX
Sbjct: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120
           XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 147
           XXXXXXXXXXXXXXXXXXXXXNWAFI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 146

[Close]

BLAST of CsaV3_3G039370.1 vs. TrEMBL
Match: tr|A0A0A0LC09|A0A0A0LC09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60
           MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX
Sbjct: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120
           XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 147
           XXXXXXXXXXXXXXXXXXXXXNWAFI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 146

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59358.1	3.1e-44	100.00	hypothetical protein Csa_3G812790 [Cucumis sativus]	[more]

BLAST of CsaV3_3G039370.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC09\|A0A0A0LC09_CUCSA	2.0e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G039370	CsaV3_3G039370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G039370.1.exon1	CsaV3_3G039370.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G039370.1.cds1	CsaV3_3G039370.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G039370.1	CsaV3_3G039370.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92