CsaV3_3G039370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G039370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 32352497 .. 32352937 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

mRNA sequence

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

Coding sequence (CDS)

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

Protein sequence

MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEKSGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIFLFVFVMMREKGNGEDEDRRERNWAFI

Homology

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BLAST of CsaV3_3G039370 vs. NCBI nr
Match: KGN59358.1 (hypothetical protein Csa_3G812790 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 3.1e-44
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60
           MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX
Sbjct: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120
           XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 147
           XXXXXXXXXXXXXXXXXXXXXNWAFI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 146

[Close]

BLAST of CsaV3_3G039370 vs. TrEMBL
Match: tr|A0A0A0LC09|A0A0A0LC09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60
           MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX
Sbjct: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120
           XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 147
           XXXXXXXXXXXXXXXXXXXXXNWAFI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXNWAFI 146

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59358.1	3.1e-44	100.00	hypothetical protein Csa_3G812790 [Cucumis sativus]	[more]

BLAST of CsaV3_3G039370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC09\|A0A0A0LC09_CUCSA	2.0e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039370.1	CsaV3_3G039370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G039370	CSPI03G37050	Wild cucumber (PI 183967)	cpicucB145
CsaV3_3G039370	Cucsa.337040	Cucumber (Gy14) v1	cgycucB523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G039370	Silver-seed gourd	carcucB0178
CsaV3_3G039370	Silver-seed gourd	carcucB0279
CsaV3_3G039370	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G039370	Cucumber (Gy14) v2	cgybcucB335
CsaV3_3G039370	Cucurbita maxima (Rimu)	cmacucB0279
CsaV3_3G039370	Cucurbita maxima (Rimu)	cmacucB0428
CsaV3_3G039370	Cucurbita maxima (Rimu)	cmacucB0976
CsaV3_3G039370	Cucurbita moschata (Rifu)	cmocucB0270
CsaV3_3G039370	Cucurbita moschata (Rifu)	cmocucB0962
CsaV3_3G039370	Cucurbita pepo (Zucchini)	cpecucB0747
CsaV3_3G039370	Cucurbita pepo (Zucchini)	cpecucB1060
CsaV3_3G039370	Bottle gourd (USVL1VR-Ls)	cuclsiB203
CsaV3_3G039370	Melon (DHL92) v3.5.1	cucmeB218
CsaV3_3G039370	Melon (DHL92) v3.6.1	cucmedB211
CsaV3_3G039370	Watermelon (Charleston Gray)	cucwcgB199
CsaV3_3G039370	Watermelon (97103) v1	cucwmB208
CsaV3_3G039370	Watermelon (97103) v2	cucwmbB187
CsaV3_3G039370	Wax gourd	cucwgoB227