CsaV3_3G026470.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGACCCAACCATTTACGACTTCCTTAGCCAAACAACAACAGCACCTCCTTCAAATAATTCAACAACACTACCCAAAGCTGCTTCTTCAAGAAAATCACATTCTCAATCTCGCATTTTCCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGACACCAAAATGCTCACAAGAGAGAAAGAGCCGCCGCCTCTCGTAAGGCGGCAGCCCTCACTACCACTGAAATTCTTCATCTCGGTTGTTCCTCCCTTCAACACTCTCCTCCCCCACCCCCACCAACAACCATCACTCACCATCATCATCATCTCCCACCCCACTTCTATCCCCTTCCCACTCCACCTTCTTTTCTTGACCACCACCATTCCTTTCATCACAATAATTTCTGTCCTAACACCTCTGCCTCGCCCGACACTCTCTCTCCCACCAACAGTACTGACCCCGCCCTTGAGCATCTAAACATCGATCTCACTCTTCGCTTATAA ATGGCAGACCCAACCATTTACGACTTCCTTAGCCAAACAACAACAGCACCTCCTTCAAATAATTCAACAACACTACCCAAAGCTGCTTCTTCAAGAAAATCACATTCTCAATCTCGCATTTTCCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGACACCAAAATGCTCACAAGAGAGAAAGAGCCGCCGCCTCTCGTAAGGCGGCAGCCCTCACTACCACTGAAATTCTTCATCTCGGTTGTTCCTCCCTTCAACACTCTCCTCCCCCACCCCCACCAACAACCATCACTCACCATCATCATCATCTCCCACCCCACTTCTATCCCCTTCCCACTCCACCTTCTTTTCTTGACCACCACCATTCCTTTCATCACAATAATTTCTGTCCTAACACCTCTGCCTCGCCCGACACTCTCTCTCCCACCAACAGTACTGACCCCGCCCTTGAGCATCTAAACATCGATCTCACTCTTCGCTTATAA ATGGCAGACCCAACCATTTACGACTTCCTTAGCCAAACAACAACAGCACCTCCTTCAAATAATTCAACAACACTACCCAAAGCTGCTTCTTCAAGAAAATCACATTCTCAATCTCGCATTTTCCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGACACCAAAATGCTCACAAGAGAGAAAGAGCCGCCGCCTCTCGTAAGGCGGCAGCCCTCACTACCACTGAAATTCTTCATCTCGGTTGTTCCTCCCTTCAACACTCTCCTCCCCCACCCCCACCAACAACCATCACTCACCATCATCATCATCTCCCACCCCACTTCTATCCCCTTCCCACTCCACCTTCTTTTCTTGACCACCACCATTCCTTTCATCACAATAATTTCTGTCCTAACACCTCTGCCTCGCCCGACACTCTCTCTCCCACCAACAGTACTGACCCCGCCCTTGAGCATCTAAACATCGATCTCACTCTTCGCTTATAA MADPTIYDFLSQTTTAPPSNNSTTLPKAASSRKSHSQSRIFPCLYCPRKFYTSQALGGHQNAHKRERAAASRKAAALTTTEILHLGCSSLQHSPPPPPPTTITHHHHHLPPHFYPLPTPPSFLDHHHSFHHNNFCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL
BLAST of CsaV3_3G026470.1 vs. NCBI nr
Match: KGN58096.1 (hypothetical protein Csa_3G509430 [Cucumis sativus]) HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. NCBI nr
Match: XP_022156503.1 (zinc finger protein 6 [Momordica charantia]) HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13 Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. NCBI nr
Match: XP_022928226.1 (protein LATE FLOWERING-like [Cucurbita moschata]) HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13 Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. NCBI nr
Match: XP_022989523.1 (protein LATE FLOWERING-like [Cucurbita maxima]) HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13 Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. NCBI nr
Match: XP_023530190.1 (zinc finger protein 7-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13 Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TAIR10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 62.0 bits (149), Expect = 4.0e-10 Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TAIR10
Match: AT5G48890.1 (C2H2-like zinc finger protein) HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08 Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TAIR10
Match: AT1G24625.1 (zinc finger protein 7) HSP 1 Score: 55.8 bits (133), Expect = 2.9e-08 Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TAIR10
Match: AT1G66140.1 (zinc finger protein 4) HSP 1 Score: 54.3 bits (129), Expect = 8.4e-08 Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TAIR10
Match: AT1G80730.1 (zinc-finger protein 1) HSP 1 Score: 54.3 bits (129), Expect = 8.4e-08 Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. Swiss-Prot
Match: sp|Q9FFX4|KNU_ARATH (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09 Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. Swiss-Prot
Match: sp|Q9FKA9|LATE_ARATH (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07 Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. Swiss-Prot
Match: sp|Q39266|ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07 Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. Swiss-Prot
Match: sp|Q42485|ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06 Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. Swiss-Prot
Match: sp|Q39263|ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2) HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06 Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TrEMBL
Match: tr|A0A0A0LDF1|A0A0A0LDF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G509430 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TrEMBL
Match: tr|A0A2P5FCC5|A0A2P5FCC5_9ROSA (Zinc finger, C2H OS=Trema orientalis OX=63057 GN=TorRG33x02_089610 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11 Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TrEMBL
Match: tr|A0A2P5CJM1|A0A2P5CJM1_PARAD (Zinc finger, C2H OS=Parasponia andersonii OX=3476 GN=PanWU01x14_146160 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 5.7e-11 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TrEMBL
Match: tr|A0A2P4INW8|A0A2P4INW8_QUESU (Zinc finger protein knuckles OS=Quercus suber OX=58331 GN=CFP56_36496 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10 Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0
BLAST of CsaV3_3G026470.1 vs. TrEMBL
Match: tr|A0A2N9HGT8|A0A2N9HGT8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41389 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 6.3e-10 Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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