CsaV3_3G026470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G026470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionZinc finger protein
Locationchr3 : 22565490 .. 22565990 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACCCAACCATTTACGACTTCCTTAGCCAAACAACAACAGCACCTCCTTCAAATAATTCAACAACACTACCCAAAGCTGCTTCTTCAAGAAAATCACATTCTCAATCTCGCATTTTCCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGACACCAAAATGCTCACAAGAGAGAAAGAGCCGCCGCCTCTCGTAAGGCGGCAGCCCTCACTACCACTGAAATTCTTCATCTCGGTTGTTCCTCCCTTCAACACTCTCCTCCCCCACCCCCACCAACAACCATCACTCACCATCATCATCATCTCCCACCCCACTTCTATCCCCTTCCCACTCCACCTTCTTTTCTTGACCACCACCATTCCTTTCATCACAATAATTTCTGTCCTAACACCTCTGCCTCGCCCGACACTCTCTCTCCCACCAACAGTACTGACCCCGCCCTTGAGCATCTAAACATCGATCTCACTCTTCGCTTATAA

mRNA sequence

ATGGCAGACCCAACCATTTACGACTTCCTTAGCCAAACAACAACAGCACCTCCTTCAAATAATTCAACAACACTACCCAAAGCTGCTTCTTCAAGAAAATCACATTCTCAATCTCGCATTTTCCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGACACCAAAATGCTCACAAGAGAGAAAGAGCCGCCGCCTCTCGTAAGGCGGCAGCCCTCACTACCACTGAAATTCTTCATCTCGGTTGTTCCTCCCTTCAACACTCTCCTCCCCCACCCCCACCAACAACCATCACTCACCATCATCATCATCTCCCACCCCACTTCTATCCCCTTCCCACTCCACCTTCTTTTCTTGACCACCACCATTCCTTTCATCACAATAATTTCTGTCCTAACACCTCTGCCTCGCCCGACACTCTCTCTCCCACCAACAGTACTGACCCCGCCCTTGAGCATCTAAACATCGATCTCACTCTTCGCTTATAA

Coding sequence (CDS)

ATGGCAGACCCAACCATTTACGACTTCCTTAGCCAAACAACAACAGCACCTCCTTCAAATAATTCAACAACACTACCCAAAGCTGCTTCTTCAAGAAAATCACATTCTCAATCTCGCATTTTCCCATGCCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGACACCAAAATGCTCACAAGAGAGAAAGAGCCGCCGCCTCTCGTAAGGCGGCAGCCCTCACTACCACTGAAATTCTTCATCTCGGTTGTTCCTCCCTTCAACACTCTCCTCCCCCACCCCCACCAACAACCATCACTCACCATCATCATCATCTCCCACCCCACTTCTATCCCCTTCCCACTCCACCTTCTTTTCTTGACCACCACCATTCCTTTCATCACAATAATTTCTGTCCTAACACCTCTGCCTCGCCCGACACTCTCTCTCCCACCAACAGTACTGACCCCGCCCTTGAGCATCTAAACATCGATCTCACTCTTCGCTTATAA

Protein sequence

MADPTIYDFLSQTTTAPPSNNSTTLPKAASSRKSHSQSRIFPCLYCPRKFYTSQALGGHQNAHKRERAAASRKAAALTTTEILHLGCSSLQHSPPPPPPTTITHHHHHLPPHFYPLPTPPSFLDHHHSFHHNNFCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL
Homology
[Close]
BLAST of CsaV3_3G026470 vs. NCBI nr
Match: KGN58096.1 (hypothetical protein Csa_3G509430 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60
           MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ
Sbjct: 1   MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60

Query: 61  NAHKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NAHKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NAHKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL 167
           XXXXXXXXXXXXXXCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL
Sbjct: 121 XXXXXXXXXXXXXXCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL 166

[Close]
BLAST of CsaV3_3G026470 vs. NCBI nr
Match: XP_022156503.1 (zinc finger protein 6 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1  MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQ---SRIFPCLYCPRKFYTSQALG 60
          MADP IYDFLSQT                  RKS SQ   SRIFPCLYCPRKFYTSQALG
Sbjct: 1  MADPAIYDFLSQT-----------TTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALG 57

Query: 61 GHQNAHKR 66
          GHQNAHKR
Sbjct: 61 GHQNAHKR 57

[Close]
BLAST of CsaV3_3G026470 vs. NCBI nr
Match: XP_022928226.1 (protein LATE FLOWERING-like [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1  MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQ---SRIFPCLYCPRKFYTSQALG 60
          MADP IYDFLSQT                  RKS SQ   SRIFPCLYCPRKFYTSQALG
Sbjct: 1  MADPAIYDFLSQT-------TASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALG 60

Query: 61 GHQNAHKR 66
          GHQNAHKR
Sbjct: 61 GHQNAHKR 61

[Close]
BLAST of CsaV3_3G026470 vs. NCBI nr
Match: XP_022989523.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1  MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQ---SRIFPCLYCPRKFYTSQALG 60
          MADP IYDFLSQT                  RKS SQ   SRIFPCLYCPRKFYTSQALG
Sbjct: 1  MADPAIYDFLSQT-------TASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALG 60

Query: 61 GHQNAHKR 66
          GHQNAHKR
Sbjct: 61 GHQNAHKR 61

[Close]
BLAST of CsaV3_3G026470 vs. NCBI nr
Match: XP_023530190.1 (zinc finger protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1  MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQ---SRIFPCLYCPRKFYTSQALG 60
          MADP IYDFLSQT                  RKS SQ   SRIFPCLYCPRKFYTSQALG
Sbjct: 1  MADPAIYDFLSQT-------NASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALG 60

Query: 61 GHQNAHKR 66
          GHQNAHKR
Sbjct: 61 GHQNAHKR 61

[Close]
BLAST of CsaV3_3G026470 vs. TAIR10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-10
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 39 RIFPCLYCPRKFYTSQALGGHQNAHKR 66
          R+FPC YCPRKFYTSQALGGHQNAHKR
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKR 62

[Close]
BLAST of CsaV3_3G026470 vs. TAIR10
Match: AT5G48890.1 (C2H2-like zinc finger protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 36 SQSRIFPCLYCPRKFYTSQALGGHQNAHKR 66
          S  RIFPCL+C RKF++SQALGGHQNAHK+
Sbjct: 30 SSLRIFPCLFCSRKFHSSQALGGHQNAHKK 59

[Close]
BLAST of CsaV3_3G026470 vs. TAIR10
Match: AT1G24625.1 (zinc finger protein 7)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-08
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 33 KSHSQSRIFPCLYCPRKFYTSQALGGHQNAHKR 66
          K  +  R+F C YC RKFY+SQALGGHQNAHKR
Sbjct: 51 KCEANPRVFSCNYCRRKFYSSQALGGHQNAHKR 83

[Close]
BLAST of CsaV3_3G026470 vs. TAIR10
Match: AT1G66140.1 (zinc finger protein 4)

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-08
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 39  RIFPCLYCPRKFYTSQALGGHQNAHKR 66
           R+F C YC RKFY+SQALGGHQNAHKR
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKR 109

[Close]
BLAST of CsaV3_3G026470 vs. TAIR10
Match: AT1G80730.1 (zinc-finger protein 1)

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-08
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 39 RIFPCLYCPRKFYTSQALGGHQNAHKR 66
          R+F C YC RKFY+SQALGGHQNAHKR
Sbjct: 66 RVFSCNYCQRKFYSSQALGGHQNAHKR 92

[Close]
BLAST of CsaV3_3G026470 vs. Swiss-Prot
Match: sp|Q9FFX4|KNU_ARATH (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 39 RIFPCLYCPRKFYTSQALGGHQNAHKR 66
          R+FPC YCPRKFYTSQALGGHQNAHKR
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKR 62

[Close]
BLAST of CsaV3_3G026470 vs. Swiss-Prot
Match: sp|Q9FKA9|LATE_ARATH (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 36 SQSRIFPCLYCPRKFYTSQALGGHQNAHKR 66
          S  RIFPCL+C RKF++SQALGGHQNAHK+
Sbjct: 30 SSLRIFPCLFCSRKFHSSQALGGHQNAHKK 59

[Close]
BLAST of CsaV3_3G026470 vs. Swiss-Prot
Match: sp|Q39266|ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 33 KSHSQSRIFPCLYCPRKFYTSQALGGHQNAHKR 66
          K  +  R+F C YC RKFY+SQALGGHQNAHKR
Sbjct: 51 KCEANPRVFSCNYCRRKFYSSQALGGHQNAHKR 83

[Close]
BLAST of CsaV3_3G026470 vs. Swiss-Prot
Match: sp|Q42485|ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 39 RIFPCLYCPRKFYTSQALGGHQNAHKR 66
          R+F C YC RKFY+SQALGGHQNAHKR
Sbjct: 66 RVFSCNYCQRKFYSSQALGGHQNAHKR 92

[Close]
BLAST of CsaV3_3G026470 vs. Swiss-Prot
Match: sp|Q39263|ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 39  RIFPCLYCPRKFYTSQALGGHQNAHKR 66
           R+F C YC RKFY+SQALGGHQNAHKR
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKR 109

[Close]
BLAST of CsaV3_3G026470 vs. TrEMBL
Match: tr|A0A0A0LDF1|A0A0A0LDF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G509430 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60
           MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ
Sbjct: 1   MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60

Query: 61  NAHKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NAHKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NAHKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL 167
           XXXXXXXXXXXXXXCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL
Sbjct: 121 XXXXXXXXXXXXXXCPNTSASPDTLSPTNSTDPALEHLNIDLTLRL 166

[Close]
BLAST of CsaV3_3G026470 vs. TrEMBL
Match: tr|A0A2P5FCC5|A0A2P5FCC5_9ROSA (Zinc finger, C2H OS=Trema orientalis OX=63057 GN=TorRG33x02_089610 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 1  MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60
          MADP  YDFL+Q XXXXXXXXXXXXXXXXX + + S  R+FPCLYCPRKFYTSQALGGHQ
Sbjct: 1  MADPATYDFLNQXXXXXXXXXXXXXXXXXXAQAAASPHRLFPCLYCPRKFYTSQALGGHQ 60

Query: 61 NAHKR 66
          NAHKR
Sbjct: 61 NAHKR 65

[Close]
BLAST of CsaV3_3G026470 vs. TrEMBL
Match: tr|A0A2P5CJM1|A0A2P5CJM1_PARAD (Zinc finger, C2H OS=Parasponia andersonii OX=3476 GN=PanWU01x14_146160 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.7e-11
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1  MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQS-----RIFPCLYCPRKFYTSQA 60
          MADP IYDFL+Q  XXXXXXXXXXXXXXX  RKS +Q+     R+FPCLYCPRKFYTSQA
Sbjct: 1  MADPAIYDFLNQ--XXXXXXXXXXXXXXXPTRKSQAQAAGSPHRLFPCLYCPRKFYTSQA 60

Query: 61 LGGHQNAHKR 66
          LGGHQNAHKR
Sbjct: 61 LGGHQNAHKR 68

[Close]
BLAST of CsaV3_3G026470 vs. TrEMBL
Match: tr|A0A2P4INW8|A0A2P4INW8_QUESU (Zinc finger protein knuckles OS=Quercus suber OX=58331 GN=CFP56_36496 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 1  MADPTIYDFLSQ--TXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGG 60
          MADP IYDFL+Q   XXXXXXXXXXXXXXXXXX      SR+FPCLYCPRKFYTSQALGG
Sbjct: 1  MADPAIYDFLNQXXXXXXXXXXXXXXXXXXXXXXXXXXSSRLFPCLYCPRKFYTSQALGG 60

Query: 61 HQNAHKR 66
          HQNAHKR
Sbjct: 61 HQNAHKR 67

[Close]
BLAST of CsaV3_3G026470 vs. TrEMBL
Match: tr|A0A2N9HGT8|A0A2N9HGT8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41389 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.3e-10
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 1  MADPTIYDFLSQTXXXXXXXXXXXXXXXXXXRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60
          M +P IYDFL+Q                      +S SR+FPCLYCPRKFYTSQALGGHQ
Sbjct: 1  MENPAIYDFLNQPAPTSSKPTRKPTQSHP---NINSSSRLFPCLYCPRKFYTSQALGGHQ 60

Query: 61 NAHKR 66
          NAHKR
Sbjct: 61 NAHKR 62

The following BLAST results are available for this feature:
BLAST of CsaV3_3G026470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58096.11.6e-28100.00hypothetical protein Csa_3G509430 [Cucumis sativus][more]
XP_022156503.15.4e-1366.18zinc finger protein 6 [Momordica charantia][more]
XP_022928226.15.4e-1366.18protein LATE FLOWERING-like [Cucurbita moschata][more]
XP_022989523.15.4e-1366.18protein LATE FLOWERING-like [Cucurbita maxima][more]
XP_023530190.15.4e-1366.18zinc finger protein 7-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_3G026470 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14010.14.0e-1092.59C2H2 and C2HC zinc fingers superfamily protein[more]
AT5G48890.11.7e-0876.67C2H2-like zinc finger protein[more]
AT1G24625.12.9e-0869.70zinc finger protein 7[more]
AT1G66140.18.4e-0881.48zinc finger protein 4[more]
AT1G80730.18.4e-0881.48zinc-finger protein 1[more]
BLAST of CsaV3_3G026470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFX4|KNU_ARATH7.2e-0992.59Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1[more]
sp|Q9FKA9|LATE_ARATH3.0e-0776.67Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1[more]
sp|Q39266|ZFP7_ARATH5.2e-0769.70Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1[more]
sp|Q42485|ZFP1_ARATH1.5e-0681.48Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1[more]
sp|Q39263|ZFP4_ARATH1.5e-0681.48Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2[more]
BLAST of CsaV3_3G026470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LDF1|A0A0A0LDF1_CUCSA1.0e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G509430 PE=4 SV=1[more]
tr|A0A2P5FCC5|A0A2P5FCC5_9ROSA3.4e-1181.54Zinc finger, C2H OS=Trema orientalis OX=63057 GN=TorRG33x02_089610 PE=4 SV=1[more]
tr|A0A2P5CJM1|A0A2P5CJM1_PARAD5.7e-1178.57Zinc finger, C2H OS=Parasponia andersonii OX=3476 GN=PanWU01x14_146160 PE=4 SV=1[more]
tr|A0A2P4INW8|A0A2P4INW8_QUESU4.9e-1082.09Zinc finger protein knuckles OS=Quercus suber OX=58331 GN=CFP56_36496 PE=4 SV=1[more]
tr|A0A2N9HGT8|A0A2N9HGT8_FAGSY6.3e-1055.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41389 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2_type
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048579 negative regulation of long-day photoperiodism, flowering
biological_process GO:0042752 regulation of circadian rhythm
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G026470.1CsaV3_3G026470.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.160.60coord: 19..84
e-value: 6.2E-7
score: 31.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..33
NoneNo IPR availablePANTHERPTHR26374:SF311C2H2 AND C2HC ZINC FINGER-CONTAINING PROTEIN-RELATEDcoord: 26..166
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 26..166
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 43..63
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 41..68
score: 10.596
IPR036236Zinc finger C2H2 superfamilySUPERFAMILYSSF57667beta-beta-alpha zinc fingerscoord: 38..68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G026470CSPI03G24690Wild cucumber (PI 183967)cpicucB144
CsaV3_3G026470Cucsa.300750Cucumber (Gy14) v1cgycucB464
CsaV3_3G026470Carg09634Silver-seed gourdcarcucB0467
CsaV3_3G026470MELO3C014938Melon (DHL92) v3.5.1cucmeB250
CsaV3_3G026470MELO3C014938.2Melon (DHL92) v3.6.1cucmedB233
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G026470Cucumber (Gy14) v2cgybcucB117
CsaV3_3G026470Cucurbita maxima (Rimu)cmacucB0292
CsaV3_3G026470Cucurbita moschata (Rifu)cmocucB0284
CsaV3_3G026470Cucurbita pepo (Zucchini)cpecucB0760
CsaV3_3G026470Watermelon (Charleston Gray)cucwcgB240
CsaV3_3G026470Watermelon (97103) v1cucwmB246
CsaV3_3G026470Watermelon (97103) v2cucwmbB210
CsaV3_3G026470Wax gourdcucwgoB318