CsaV3_3G018290.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018290.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14021618 .. 14022040 (-)
Sequence length423
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

mRNA sequence

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

Coding sequence (CDS)

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

Protein sequence

MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVGSLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKLDGVVANVKSILLKIFVYHQS
Homology
[Close]
BLAST of CsaV3_3G018290.1 vs. NCBI nr
Match: KGN65067.1 (hypothetical protein Csa_1G189180 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 2.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60
           MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG
Sbjct: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60

Query: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120
           SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL
Sbjct: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120

Query: 121 DGVVANVKSILLKIFVYHQS 141
           DGVVANVKSILLKIFVYHQS
Sbjct: 121 DGVVANVKSILLKIFVYHQS 140

[Close]
BLAST of CsaV3_3G018290.1 vs. TrEMBL
Match: tr|A0A0A0LW77|A0A0A0LW77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G189180 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.3e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60
           MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG
Sbjct: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60

Query: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120
           SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL
Sbjct: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120

Query: 121 DGVVANVKSILLKIFVYHQS 141
           DGVVANVKSILLKIFVYHQS
Sbjct: 121 DGVVANVKSILLKIFVYHQS 140

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65067.12.0e-72100.00hypothetical protein Csa_1G189180 [Cucumis sativus][more]
BLAST of CsaV3_3G018290.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018290.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018290.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LW77|A0A0A0LW77_CUCSA1.3e-72100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G189180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G018290CsaV3_3G018290gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G018290.1.cds1CsaV3_3G018290.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G018290.1.exon1CsaV3_3G018290.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G018290.1CsaV3_3G018290.1-proteinpolypeptide