CsaV3_3G018290 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G018290
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 14021618 .. 14022040 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

mRNA sequence

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

Coding sequence (CDS)

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

Protein sequence

MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVGSLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKLDGVVANVKSILLKIFVYHQS

Homology

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BLAST of CsaV3_3G018290 vs. NCBI nr
Match: KGN65067.1 (hypothetical protein Csa_1G189180 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 2.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60
           MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG
Sbjct: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60

Query: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120
           SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL
Sbjct: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120

Query: 121 DGVVANVKSILLKIFVYHQS 141
           DGVVANVKSILLKIFVYHQS
Sbjct: 121 DGVVANVKSILLKIFVYHQS 140

[Close]

BLAST of CsaV3_3G018290 vs. TrEMBL
Match: tr|A0A0A0LW77|A0A0A0LW77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G189180 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.3e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60
           MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG
Sbjct: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60

Query: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120
           SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL
Sbjct: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120

Query: 121 DGVVANVKSILLKIFVYHQS 141
           DGVVANVKSILLKIFVYHQS
Sbjct: 121 DGVVANVKSILLKIFVYHQS 140

The following BLAST results are available for this feature:

BLAST of CsaV3_3G018290 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65067.1	2.0e-72	100.00	hypothetical protein Csa_1G189180 [Cucumis sativus]	[more]

BLAST of CsaV3_3G018290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G018290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G018290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LW77\|A0A0A0LW77_CUCSA	1.3e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G189180 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G018290.1	CsaV3_3G018290.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G018290	Cucumber (Chinese Long) v3	cuccucB153
CsaV3_3G018290	Cucumber (Chinese Long) v3	cuccucB156
CsaV3_3G018290	Silver-seed gourd	carcucB0326
CsaV3_3G018290	Silver-seed gourd	carcucB0403
CsaV3_3G018290	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G018290	Cucumber (Gy14) v2	cgybcucB282
CsaV3_3G018290	Cucumber (Gy14) v2	cgybcucB329
CsaV3_3G018290	Cucumber (Gy14) v1	cgycucB123
CsaV3_3G018290	Cucumber (Gy14) v1	cgycucB338
CsaV3_3G018290	Cucumber (Gy14) v1	cgycucB369
CsaV3_3G018290	Cucurbita maxima (Rimu)	cmacucB0145
CsaV3_3G018290	Cucurbita maxima (Rimu)	cmacucB0373
CsaV3_3G018290	Cucurbita maxima (Rimu)	cmacucB0618
CsaV3_3G018290	Cucurbita maxima (Rimu)	cmacucB0829
CsaV3_3G018290	Cucurbita moschata (Rifu)	cmocucB0133
CsaV3_3G018290	Cucurbita moschata (Rifu)	cmocucB0370
CsaV3_3G018290	Cucurbita moschata (Rifu)	cmocucB0602
CsaV3_3G018290	Cucurbita moschata (Rifu)	cmocucB0814
CsaV3_3G018290	Cucurbita pepo (Zucchini)	cpecucB0247
CsaV3_3G018290	Cucurbita pepo (Zucchini)	cpecucB0302
CsaV3_3G018290	Cucurbita pepo (Zucchini)	cpecucB0484
CsaV3_3G018290	Cucurbita pepo (Zucchini)	cpecucB0846
CsaV3_3G018290	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G018290	Wild cucumber (PI 183967)	cpicucB347
CsaV3_3G018290	Wild cucumber (PI 183967)	cpicucB396
CsaV3_3G018290	Bottle gourd (USVL1VR-Ls)	cuclsiB184
CsaV3_3G018290	Bottle gourd (USVL1VR-Ls)	cuclsiB205
CsaV3_3G018290	Bottle gourd (USVL1VR-Ls)	cuclsiB230
CsaV3_3G018290	Melon (DHL92) v3.5.1	cucmeB189
CsaV3_3G018290	Melon (DHL92) v3.5.1	cucmeB247
CsaV3_3G018290	Melon (DHL92) v3.5.1	cucmeB265
CsaV3_3G018290	Melon (DHL92) v3.6.1	cucmedB181
CsaV3_3G018290	Melon (DHL92) v3.6.1	cucmedB246
CsaV3_3G018290	Melon (DHL92) v3.6.1	cucmedB260
CsaV3_3G018290	Watermelon (Charleston Gray)	cucwcgB214
CsaV3_3G018290	Watermelon (Charleston Gray)	cucwcgB218
CsaV3_3G018290	Watermelon (Charleston Gray)	cucwcgB238
CsaV3_3G018290	Watermelon (97103) v1	cucwmB252
CsaV3_3G018290	Watermelon (97103) v1	cucwmB279
CsaV3_3G018290	Watermelon (97103) v2	cucwmbB201
CsaV3_3G018290	Watermelon (97103) v2	cucwmbB217
CsaV3_3G018290	Wax gourd	cucwgoB313
CsaV3_3G018290	Wax gourd	cucwgoB287