CsaV3_3G017940.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G017940.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 13646402 .. 13647795 (-)
Sequence length	1394

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAACACTTCAACGTTCTTCTGCTTCTTCTTATGCTTCTGCTTCTTCTTCTTCTGCTGCTTCTGCTTCTGCTGCTTCTTCTTCTGCTTCTTCTTCTGCTCCTACTTCTGCTCCTTCTCCTTCTGCTTCTTCTCCTTCTGCTTCTCCTTCTGCTTCTCCTTCTGCCTCTGCCTTCTACTTCTGCCTCTGCCTTTTGCTTCTGCTTCTGCCTTCTGCTGCTTCTTCTGCTGCTACTTCTTCTGCTGCTTCTTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTCCTTCCTCTTATTCTCCTTCTTCTTCTCCTCCTTCCTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTTCTTCTTCTGCTCCTGCTTCTGCTCCTTCTCCTCCTGCTTCTTCTCCTTCTGCTTCTCCTTCTGCCTCTGCCTTCTACTTCTGCCTCTGCCTTTTTCTTCTGCTTCTGCCTTCTGCTGCTTCCTCTGCTTCTTCTGCTTCCTCTGCTGCTTCTGCTGCTGCTTCTGCTGCTTCTTCTGCTACTTCTTCTGCTTCTTCTTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTCCTTCCTCTTCTTCTCCTTCTTCTTCTCCTCCTTCCTCTTCTTCTTCTGCTTCTTCTGCTTCTGCTTCTTCTCCTTCTTCTGCTTCTTCTCCTGCTTCTTTTCCTTCTTCTCCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTGCTTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTATGCTTCTTCTTCTGCTTCTGCTTCTTCTGCTTCTGCTTCTTCTCCTTCTCCTGCTTCTTCTCCTTCTTCTTCTCCTTCTTCTCCTTCTTCTCCTGCTTCTTCTGCTTCTTCTGCTTCTCCTCCTTCTTCTCCTCCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTCCTTCTGCTCCTTCTTCTCCTTCTGCTTCTTCTCCTTCTGCTCCTTCTTCTTCTTCTGCTCCTTCTCCTCCTTCTTCTTCTGCTTCTTCTCCTCCTTCTTCTCCTCCTCCTTCTTCTGCTCCTTCTTCTTCTTCTGCTCCTTCTTCTTCTGCTTCTTTTTCTGCTCCTTCTTCTTCTTCTGCTTCTTCTTCTGCTCCTTCTTCTTCTCCTTCTCCTTCTTCTTCTCCTTCTTCTTCTTCTCCTTCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTTCTAATCACCACATTTCTATCCTCTTTCAGATT

mRNA sequence

TTCAAACACTTCAACGTTCTTCTGCTTCTTCTTATGCTTCTGCTTCTTCTTCTTCTGCTGCTTCTGCTTCTGCTGCTTCTTCTTCTGCTTCTTCTTCTGCTCCTACTTCTGCTCCTTCTCCTTCTGCTTCTTCTCCTTCTGCTTCTCCTTCTGCTTCTCCTTCTGCCTCTGCCTTCTACTTCTGCCTCTGCCTTTTGCTTCTGCTTCTGCCTTCTGCTGCTTCTTCTGCTGCTACTTCTTCTGCTGCTTCTTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTCCTTCCTCTTATTCTCCTTCTTCTTCTCCTCCTTCCTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTTCTTCTTCTGCTCCTGCTTCTGCTCCTTCTCCTCCTGCTTCTTCTCCTTCTGCTTCTCCTTCTGCCTCTGCCTTCTACTTCTGCCTCTGCCTTTTTCTTCTGCTTCTGCCTTCTGCTGCTTCCTCTGCTTCTTCTGCTTCCTCTGCTGCTTCTGCTGCTGCTTCTGCTGCTTCTTCTGCTACTTCTTCTGCTTCTTCTTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTCCTTCCTCTTCTTCTCCTTCTTCTTCTCCTCCTTCCTCTTCTTCTTCTGCTTCTTCTGCTTCTGCTTCTTCTCCTTCTTCTGCTTCTTCTCCTGCTTCTTTTCCTTCTTCTCCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTGCTTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTATGCTTCTTCTTCTGCTTCTGCTTCTTCTGCTTCTGCTTCTTCTCCTTCTCCTGCTTCTTCTCCTTCTTCTTCTCCTTCTTCTCCTTCTTCTCCTGCTTCTTCTGCTTCTTCTGCTTCTCCTCCTTCTTCTCCTCCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTCCTTCTGCTCCTTCTTCTCCTTCTGCTTCTTCTCCTTCTGCTCCTTCTTCTTCTTCTGCTCCTTCTCCTCCTTCTTCTTCTGCTTCTTCTCCTCCTTCTTCTCCTCCTCCTTCTTCTGCTCCTTCTTCTTCTTCTGCTCCTTCTTCTTCTGCTTCTTTTTCTGCTCCTTCTTCTTCTTCTGCTTCTTCTTCTGCTCCTTCTTCTTCTCCTTCTCCTTCTTCTTCTCCTTCTTCTTCTTCTCCTTCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTTCTAATCACCACATTTCTATCCTCTTTCAGATT

Coding sequence (CDS)

TTCAAACACTTCAACGTTCTTCTGCTTCTTCTTATGCTTCTGCTTCTTCTTCTTCTGCTGCTTCTGCTTCTGCTGCTTCTTCTTCTGCTTCTTCTTCTGCTCCTACTTCTGCTCCTTCTCCTTCTGCTTCTTCTCCTTCTGCTTCTCCTTCTGCTTCTCCTTCTGCCTCTGCCTTCTACTTCTGCCTCTGCCTTTTGCTTCTGCTTCTGCCTTCTGCTGCTTCTTCTGCTGCTACTTCTTCTGCTGCTTCTTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTCCTTCCTCTTATTCTCCTTCTTCTTCTCCTCCTTCCTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTTCTTCTTCTGCTCCTGCTTCTGCTCCTTCTCCTCCTGCTTCTTCTCCTTCTGCTTCTCCTTCTGCCTCTGCCTTCTACTTCTGCCTCTGCCTTTTTCTTCTGCTTCTGCCTTCTGCTGCTTCCTCTGCTTCTTCTGCTTCCTCTGCTGCTTCTGCTGCTGCTTCTGCTGCTTCTTCTGCTACTTCTTCTGCTTCTTCTTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTGCTTCCTCTTCTTCTTCTCCTTCCTCTTCTTCTCCTTCTTCTTCTCCTCCTTCCTCTTCTTCTTCTGCTTCTTCTGCTTCTGCTTCTTCTCCTTCTTCTGCTTCTTCTCCTGCTTCTTTTCCTTCTTCTCCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTGCTTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTATGCTTCTTCTTCTGCTTCTGCTTCTTCTGCTTCTGCTTCTTCTCCTTCTCCTGCTTCTTCTCCTTCTTCTTCTCCTTCTTCTCCTTCTTCTCCTGCTTCTTCTGCTTCTTCTGCTTCTCCTCCTTCTTCTCCTCCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTCCTTCTGCTCCTTCTTCTCCTTCTGCTTCTTCTCCTTCTGCTCCTTCTTCTTCTTCTGCTCCTTCTCCTCCTTCTTCTTCTGCTTCTTCTCCTCCTTCTTCTCCTCCTCCTTCTTCTGCTCCTTCTTCTTCTTCTGCTCCTTCTTCTTCTGCTTCTTTTTCTGCTCCTTCTTCTTCTTCTGCTTCTTCTTCTGCTCCTTCTTCTTCTCCTTCTCCTTCTTCTTCTCCTTCTTCTTCTTCTCCTTCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTTCTCCTTCTTCTTCTAATCACCACATTTCTATCCTCTTTCAGATT

Protein sequence

FKHFNVLLLLLMLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLPLPSTSASAFCFCFCLLLLLLLLLLLLLLLLLLLPLLLLLPLLLLLPLILLLLLLLPLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLPLPSTSASAFFFCFCLLLLPLLLLLPLLLLLLLLLLLLLLLLLLLLLLLLPLLLLLPLLLLLPLLLLLLLLLPLLLLLLLLLLLLLLLLLLLLLFLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLITTFLSSFRX

Homology

The following BLAST results are available for this feature:

BLAST of CsaV3_3G017940.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G017940.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G017940.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G017940.1 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **INTERPRO**
Term	Definition
IPR017452	GPCR_Rhodpsn_7TM
IPR000515	MetI-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G017940	CsaV3_3G017940	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G017940.1.cds1	CsaV3_3G017940.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G017940.1.exon1	CsaV3_3G017940.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G017940.1	CsaV3_3G017940.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000515	ABC transporter type 1, transmembrane domain MetI-like	PROSITE	PS50928	ABC_TM1	coord: 70..260 score: 10.104
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 4..306 score: 9.378