CsaV3_3G004270.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G004270.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Nuclear transcription factor Y subunit B
Location	chr3 : 3622009 .. 3625576 (+)
Sequence length	696

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCTTTTTAATGTATAGATATGGAAGTATAGGAATTGAAGAGAGACTTGAGGTGGGTATGGTTTTTTTTTTTTTTTTTATAATACAAATCTTTTTATTTCTCCCTTGCTTTCTATATATATATAATAAATACCTATTCATTTGTAATTATTCATTGGGTTCATCTTCACTTTTTAACCTATAAAAATTTATTATGTGTGTTGTTATGAGAAAGTCTAAAAAAATGGGATTGGAAAAAAGTAAAATGTTTACTTATGTAGATCATATGAAATGCAATACTAAAAGGAAACGAAAGATTGATATGCAAAAGGGGTGTCTATCACTCAAAATGAATTATTTGATATGTCTAATTAAGAGTTTGATTTTAGTTTATTTAATTAAAAGTAATAAGATTTATTTTGATTTTCTCTTTTCCTCCCATGCATTCTTTAATTAAACCAATCTTCTCTTATTTAGATAAATAAATAAATAAAAACATTTTAAAACCATTGGTGGTTTCTTTGCTTTGTAACTCTAAAATCTAATAGTTTTTTCTATGGACAAAAAACGGCTCTAAGGAAATTTGGTAGAATTAAGATAGAAAATATTTCTATGTATGAACATTTATTGAAGTTAAGATCGAAGAGATTGAGATCCTTCTCAAAAGGTGTGGGTATTTCATTTTTTTTTTCATCTTTTATAAAACAAATCTCTTTTTTTTCTCCCAATTATTGCTTTCTTATTTTCTATTTATGAAACAAAAAAACCCTACAATTATATAAATATATGAAATTTGAATACAAACAAAATAAATTAGTCTAATATATTGCTATCAAATTCTTCTCAGCCATTTTTTTTCTCTTTTCCTTTTTTTTTTCTCTAAATTTTTATAATTTAGGATGATTTTTCTGATGCAATTCTCAAAATTCCCTTTACTATTTTTTTTATAAAGAAATTAATTAGGAGATAAAGTGGTTGTGATTTGAAATTAAGTTGTTAAAAGAAATTAATATTTTTCTGATGCTATCTCATCCTCTCATGCAATGTTTCTCTTTTCCTCTTTTATTCTCTAATTTCTCTTCCATTATGTTTTTCTTTTCTCTCGTTCTTTATAATTTTTGATGATTTTTCTAAGGTATAAAACACAATTTACCTTTTCTTTTTCCTTTTTCTTTTTTATATATATTTTTTATAAAGAAATTACTTAGAAGATAAAGTGGTTGTGATTTGAAAATTAAGTTGTCAAGGAATTGTGTTTATGTTTTCAATTAAGTAAGTAAATTAAAGTTTAAACAAAGTTGTTCCATTTAGTTACATTTTAGTAGTTAGGATATTGATTTTATAAAGATATATACATATGAAGTAAAACACAATAGACAAATTGGATTACAATAGTTAACTCTCTTTCTTCTATTGTATACAGGAATTGAAAGAGAGACTTAAAAGGGTGGGTGGATTTCTTTTTGTTGAAAACAAATCTCTTTATTTCTTTCTTATTAAATGAAGAAAGAAAATGTGATTGGAGAAAAGTAAAATGTTTACACATGTAGATCATGTAGAATGCAATACTAAAAAGAGGAAACAAGTGGTTGATATGCAAAAGGTGTTTCTGTCAATTAATTAAAGTGAATCAGAGCTCACTGCATCTCTATAATTAGTTTTTGACATGTGTAATTAACTGTTTGTTTTTAATTTGTTTAATTAGAAATATATACAAAAGTCAAAATAAGTTTCTCTTATATATATATATAATTTCATGGAAATATAAAATTGCAATTGAAAAGGTTGGATTACATTTTCTATCTTCTTTGTCCAACATCGTCTACCATTGCTGCTTTTCTTTGCTTTGTAACTCTTAATTCTCCTAGTTTTTTCTATTGGCCAAAAAGAGCACTAAGGAAATTAGAATTAAGATTGAAAACATTTTGTTTGATCATACATATCCACATATGTTCTCTCATTCTTCTTCTTCTCTTTTATGATCATTTACATCAGATTTCTTTTCACTTTCTCTTTTCCCTCCTTCATTCTTTAAAACCAATCTTTTCTAATCGACAATTTTAGGATTACAATTCCTATCTTCTTCTTTCTTGAATATCTTTACTTGATTGGTTTCTTTCCTGTGTAACTATCTAAATTGTAGGTTTTTTTTTTGTTGACAAAAAGGGTTCCATGGAAATTAAATTTGTTGAATTAATTTCTATTTATAGACATTTTAGTTGAGATTGAAAAGATGAGATAGCTATAATTTTACTTTTCTTTTTTCTTTATGAAACAAATAATCTCTTAATTTTGAATACAAACAATCTCAATTATGTTATTAAGGAAATTGTATTGTTCACAATACCTTGTTATGACTCATGAAAGAAGATTTTAGGAGTGAAGAAAAGTAAAATGTTTACACATGTAAACCATGTAAAATACTGAGTCTTTTTCTTTCTTTAAAGTGAAAGTGTGTCAGAACTATAATTAAATATCTTACTTTTTTTATTTAATTTAAAATTCAAAATTCAAATAGTCTAATATATTGCTGTCAAATTCTTCACACCATTTTTTTCTCTTTTCCTTTTTTTTCTCACTAATCCTTTATAATTTAGGATGATTTTTTAATGTAGAGAGTATCAATTCTCAAAATTTTCTTTAATATTTTTTTATAAAGAAATTAATTAGGATATAAAGTGGCTGTGATTTGAAAATTAAGTTGTTAAGAAATTGTGTTTATAATTTCAATTAGTGAAGTAAATTAAAGTTTAAACAAACTAGTTCTATTTCCTTTCATTTGAGTAGTTAGCATTTTGATTTCATAATATATATAGACTGTATGTTGATGAAAAGGGGCAATCAAATTTTTTGTATGTATAGACATGAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTATCTTGATGAATCTGAATTTGAAGTACTTGTGTCGTTATTCAGGACTGAACACGATGCTGACCCCAAACAACCCAACCTCCATCAACAGCAATCCAAACACCAATCAGCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCTCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

mRNA sequence

ATGAAATTCTTTTTAATGTATAGATATGGAAGTATAGGAATTGAAGAGAGACTTGAGGTGGGACTGAACACGATGCTGACCCCAAACAACCCAACCTCCATCAACAGCAATCCAAACACCAATCAGCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCTCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

Coding sequence (CDS)

ATGAAATTCTTTTTAATGTATAGATATGGAAGTATAGGAATTGAAGAGAGACTTGAGGTGGGACTGAACACGATGCTGACCCCAAACAACCCAACCTCCATCAACAGCAATCCAAACACCAATCAGCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCTCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

Protein sequence

MKFFLMYRYGSIGIEERLEVGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL

Homology

[Close]

BLAST of CsaV3_3G004270.1 vs. NCBI nr
Match: KGN56038.1 (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 9.6e-101
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 21  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQ 80
           GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQC+VREQ
Sbjct: 29  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQ 88

Query: 81  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTA 140
           DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERC REQRKTVTA
Sbjct: 89  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTA 148

Query: 141 EDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 200
           EDVLWAMGKLGFD+YIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI
Sbjct: 149 EDVLWAMGKLGFDDYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 208

Query: 201 GQVPAGMFDAMGG 214
           GQVPAGMFDAMGG
Sbjct: 209 GQVPAGMFDAMGG 221

[Close]

BLAST of CsaV3_3G004270.1 vs. NCBI nr
Match: XP_008449191.1 (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 162/190 (85.26%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 25  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 84
           M+TPN  TSIN+ PN+N HLSNGGT+ GNSSATSPLSVA       QNQQC+VREQDQYM
Sbjct: 2   MVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAXXXXXXXQNQQCVVREQDQYM 61

Query: 85  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 144
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 145 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 204
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGMISPYGQAFQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGH 181

Query: 205 VPAGMFDAMG 213
           VPAGMFDAMG
Sbjct: 182 VPAGMFDAMG 191

[Close]

BLAST of CsaV3_3G004270.1 vs. NCBI nr
Match: KGN56039.1 (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 154/192 (80.21%), Postives = 157/192 (81.77%), Query Frame = 0


Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN MLTPNNP SIN+NPNTN HLS+GGTSIGNSSATSPLSVAATANNNEQNQQC+VREQD
Sbjct: 41  LNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQD 100

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMPMAN                             YISFITSEANERC REQRKTVTAE
Sbjct: 101 QYMPMAN-----------------------------YISFITSEANERCQREQRKTVTAE 160

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQIG 201
           DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYG QVGMISPYGQAFQIG
Sbjct: 161 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIG 203

Query: 202 QVPAGMFDAMGG 214
            VPAGMFDAMGG
Sbjct: 221 HVPAGMFDAMGG 203

[Close]

BLAST of CsaV3_3G004270.1 vs. NCBI nr
Match: XP_023540511.1 (nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 144/194 (74.23%), Postives = 157/194 (80.93%), Query Frame = 0


Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN +LT N  +S N+  NTN    NG     NS  T     +  A NNEQ+QQC+VREQD
Sbjct: 28  LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQD 87

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMP+ANV RIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVT E
Sbjct: 88  QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 147

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQ 201
           DVLWA+GKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQ FQ
Sbjct: 148 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 207

Query: 202 IGQVPAGMFDAMGG 214
           IG VP+GMFDAMGG
Sbjct: 208 IGHVPSGMFDAMGG 221

[Close]

BLAST of CsaV3_3G004270.1 vs. NCBI nr
Match: XP_023540510.1 (nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 144/194 (74.23%), Postives = 157/194 (80.93%), Query Frame = 0


Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN +LT N  +S N+  NTN    NG     NS  T     +  A NNEQ+QQC+VREQD
Sbjct: 41  LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQD 100

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMP+ANV RIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVT E
Sbjct: 101 QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 160

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQ 201
           DVLWA+GKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQ FQ
Sbjct: 161 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 220

Query: 202 IGQVPAGMFDAMGG 214
           IG VP+GMFDAMGG
Sbjct: 221 IGHVPSGMFDAMGG 234

[Close]

BLAST of CsaV3_3G004270.1 vs. TAIR10
Match: AT5G47670.1 (nuclear factor Y, subunit B6)

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-43
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 65  TANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 124
           T+N  E  ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGE--EECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 125 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 174
           EANERC REQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CsaV3_3G004270.1 vs. TAIR10
Match: AT1G21970.1 (Histone superfamily protein)

HSP 1 Score: 171.4 bits (433), Expect = 6.5e-43
Identity = 100/184 (54.35%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 31  PTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVI 90
           P SI S  N +QH SN  T + +                     C+ REQDQYMP+ANVI
Sbjct: 13  PKSI-SELNLDQH-SNNPTPMTSXXXXXXXXXXXXXXXXXXXXXCVAREQDQYMPIANVI 72

Query: 91  RIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKL 150
           RIM++ LPSHAKISDD KETIQECVSEYISF+T EANERC REQRKT+TAED+LWAM KL
Sbjct: 73  RIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKL 132

Query: 151 GFDNYIEPLTVFLNRYRESE-----SIRTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPA 210
           GFDNY++PLTVF+NRYRE E     ++R EP   R    G  +G   P       G    
Sbjct: 133 GFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGY 192

[Close]

BLAST of CsaV3_3G004270.1 vs. TAIR10
Match: AT5G47640.1 (nuclear factor Y, subunit B2)

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-32
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 67  NNNEQNQQCMV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 126
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 127 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           EA+++C +E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122

[Close]

BLAST of CsaV3_3G004270.1 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-32
Identity = 60/97 (61.86%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 78  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKT 137
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++C RE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 138 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           +  +D+LWAM  LGF++Y+EPL V+L +YRE E  +T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKT 116

[Close]

BLAST of CsaV3_3G004270.1 vs. TAIR10
Match: AT3G53340.1 (nuclear factor Y, subunit B10)

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-31
Identity = 59/94 (62.77%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 77  VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRK 136
           VREQD+++P+AN+ RIMKR LP + KI+ D KET+QECVSE+ISF+TSEA+++C RE+RK
Sbjct: 27  VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86

Query: 137 TVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 171
           T+  +D+LWAM  LGF++YI+PL V+L RYRE E
Sbjct: 87  TINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]

BLAST of CsaV3_3G004270.1 vs. Swiss-Prot
Match: sp|Q84W66|NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-42
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 65  TANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 124
           T+N  E  ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGE--EECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 125 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 174
           EANERC REQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CsaV3_3G004270.1 vs. Swiss-Prot
Match: sp|Q9SFD8|NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 100/184 (54.35%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 31  PTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVI 90
           P SI S  N +QH SN  T + +                     C+ REQDQYMP+ANVI
Sbjct: 13  PKSI-SELNLDQH-SNNPTPMTSXXXXXXXXXXXXXXXXXXXXXCVAREQDQYMPIANVI 72

Query: 91  RIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKL 150
           RIM++ LPSHAKISDD KETIQECVSEYISF+T EANERC REQRKT+TAED+LWAM KL
Sbjct: 73  RIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKL 132

Query: 151 GFDNYIEPLTVFLNRYRESE-----SIRTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPA 210
           GFDNY++PLTVF+NRYRE E     ++R EP   R    G  +G   P       G    
Sbjct: 133 GFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGY 192

[Close]

BLAST of CsaV3_3G004270.1 vs. Swiss-Prot
Match: sp|Q9FGJ3|NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-31
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 67  NNNEQNQQCMV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 126
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 127 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           EA+++C +E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122

[Close]

BLAST of CsaV3_3G004270.1 vs. Swiss-Prot
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.5e-31
Identity = 60/97 (61.86%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 78  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKT 137
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++C RE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 138 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           +  +D+LWAM  LGF++Y+EPL V+L +YRE E  +T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKT 116

[Close]

BLAST of CsaV3_3G004270.1 vs. Swiss-Prot
Match: sp|P25209|NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.3e-31
Identity = 58/94 (61.70%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 77  VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRK 136
           VREQD+++P+AN+ RIMK+ +P++ KI+ D KET+QECVSE+ISFITSEA+++C RE+RK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 137 TVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 171
           T+  +D+LWAM  LGF++YIEPL V+L +YRE E
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 122

[Close]

BLAST of CsaV3_3G004270.1 vs. TrEMBL
Match: tr|A0A0A0L2U1|A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 6.4e-101
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 21  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQ 80
           GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQC+VREQ
Sbjct: 29  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQ 88

Query: 81  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTA 140
           DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERC REQRKTVTA
Sbjct: 89  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTA 148

Query: 141 EDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 200
           EDVLWAMGKLGFD+YIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI
Sbjct: 149 EDVLWAMGKLGFDDYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 208

Query: 201 GQVPAGMFDAMGG 214
           GQVPAGMFDAMGG
Sbjct: 209 GQVPAGMFDAMGG 221

[Close]

BLAST of CsaV3_3G004270.1 vs. TrEMBL
Match: tr|A0A1S3BKV5|A0A1S3BKV5_CUCME (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 7.8e-83
Identity = 162/190 (85.26%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 25  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 84
           M+TPN  TSIN+ PN+N HLSNGGT+ GNSSATSPLSVA       QNQQC+VREQDQYM
Sbjct: 2   MVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAXXXXXXXQNQQCVVREQDQYM 61

Query: 85  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 144
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 145 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 204
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGMISPYGQAFQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGH 181

Query: 205 VPAGMFDAMG 213
           VPAGMFDAMG
Sbjct: 182 VPAGMFDAMG 191

[Close]

BLAST of CsaV3_3G004270.1 vs. TrEMBL
Match: tr|A0A0A0L4W1|A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.3e-76
Identity = 154/192 (80.21%), Postives = 157/192 (81.77%), Query Frame = 0


Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN MLTPNNP SIN+NPNTN HLS+GGTSIGNSSATSPLSVAATANNNEQNQQC+VREQD
Sbjct: 41  LNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQD 100

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMPMAN                             YISFITSEANERC REQRKTVTAE
Sbjct: 101 QYMPMAN-----------------------------YISFITSEANERCQREQRKTVTAE 160

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQIG 201
           DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYG QVGMISPYGQAFQIG
Sbjct: 161 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIG 203

Query: 202 QVPAGMFDAMGG 214
            VPAGMFDAMGG
Sbjct: 221 HVPAGMFDAMGG 203

[Close]

BLAST of CsaV3_3G004270.1 vs. TrEMBL
Match: tr|A0A0A0L645|A0A0A0L645_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G048940 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 25  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 84
           MLTPN PTSIN+ PNTN HLSNGGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQYM
Sbjct: 2   MLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYM 61

Query: 85  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 144
           P+ANVIR M+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRSMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 145 WAMGKL 151
           WAMGKL
Sbjct: 122 WAMGKL 127

[Close]

BLAST of CsaV3_3G004270.1 vs. TrEMBL
Match: tr|A0A2P5SND0|A0A2P5SND0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02503 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 112/155 (72.26%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 66  ANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSE 125
           AN+N     CMVREQDQYMP+ANVIRIM+RILP+HAKISDD KETIQECVSEYISFIT E
Sbjct: 27  ANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITGE 86

Query: 126 ANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE----SIRTEPMLRRN 185
           ANERC REQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E    S+R+EPML+R 
Sbjct: 87  ANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKRG 146

Query: 186 VDYGAQVGMISPYGQAFQIGQVPAGMFD---AMGG 214
           +DYG  + M++PYG  F +G    G+FD   AMGG
Sbjct: 147 IDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGG 179

The following BLAST results are available for this feature:

BLAST of CsaV3_3G004270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56038.1	9.6e-101	98.45	hypothetical protein Csa_3G049440 [Cucumis sativus]	[more]
XP_008449191.1	1.2e-82	85.26	PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]	[more]
KGN56039.1	1.4e-75	80.21	hypothetical protein Csa_3G055940 [Cucumis sativus]	[more]
XP_023540511.1	1.2e-71	74.23	nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_023540510.1	1.2e-71	74.23	nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp...	[more]

BLAST of CsaV3_3G004270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47670.1	1.0e-43	77.06	nuclear factor Y, subunit B6	[more]
AT1G21970.1	6.5e-43	54.35	Histone superfamily protein	[more]
AT5G47640.1	1.0e-32	58.18	nuclear factor Y, subunit B2	[more]
AT4G14540.1	3.0e-32	61.86	nuclear factor Y, subunit B3	[more]
AT3G53340.1	2.6e-31	62.77	nuclear factor Y, subunit B10	[more]

BLAST of CsaV3_3G004270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84W66\|NFYB6_ARATH	1.8e-42	77.06	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q9SFD8\|NFYB9_ARATH	1.2e-41	54.35	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q9FGJ3\|NFYB2_ARATH	1.9e-31	58.18	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|O23310\|NFYB3_ARATH	5.5e-31	61.86	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|P25209\|NFYB_MAIZE	9.3e-31	61.70	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of CsaV3_3G004270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2U1\|A0A0A0L2U1_CUCSA	6.4e-101	98.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1	[more]
tr\|A0A1S3BKV5\|A0A1S3BKV5_CUCME	7.8e-83	85.26	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]
tr\|A0A0A0L4W1\|A0A0A0L4W1_CUCSA	9.3e-76	80.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1	[more]
tr\|A0A0A0L645\|A0A0A0L645_CUCSA	1.2e-54	89.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G048940 PE=4 SV=1	[more]
tr\|A0A2P5SND0\|A0A2P5SND0_GOSBA	4.5e-54	72.26	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02503 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G004270	CsaV3_3G004270	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G004270.1.exon1	CsaV3_3G004270.1.exon1	exon
CsaV3_3G004270.1.exon2	CsaV3_3G004270.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G004270.1.cds1	CsaV3_3G004270.1.cds1	CDS
CsaV3_3G004270.1.cds2	CsaV3_3G004270.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G004270.1	CsaV3_3G004270.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 149..167 score: 32.06 coord: 130..148 score: 32.3 coord: 111..129 score: 47.73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..59
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 39..195
None	No IPR available	PANTHER	PTHR11064:SF79	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATED	coord: 39..195
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 83..147 e-value: 1.4E-24 score: 86.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 70..182 e-value: 1.6E-39 score: 136.9
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 80..175
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 114..130