CsaV3_3G004270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNuclear transcription factor Y subunit B
Locationchr3 : 3622009 .. 3625576 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCTTTTTAATGTATAGATATGGAAGTATAGGAATTGAAGAGAGACTTGAGGTGGGTATGGTTTTTTTTTTTTTTTTTATAATACAAATCTTTTTATTTCTCCCTTGCTTTCTATATATATATAATAAATACCTATTCATTTGTAATTATTCATTGGGTTCATCTTCACTTTTTAACCTATAAAAATTTATTATGTGTGTTGTTATGAGAAAGTCTAAAAAAATGGGATTGGAAAAAAGTAAAATGTTTACTTATGTAGATCATATGAAATGCAATACTAAAAGGAAACGAAAGATTGATATGCAAAAGGGGTGTCTATCACTCAAAATGAATTATTTGATATGTCTAATTAAGAGTTTGATTTTAGTTTATTTAATTAAAAGTAATAAGATTTATTTTGATTTTCTCTTTTCCTCCCATGCATTCTTTAATTAAACCAATCTTCTCTTATTTAGATAAATAAATAAATAAAAACATTTTAAAACCATTGGTGGTTTCTTTGCTTTGTAACTCTAAAATCTAATAGTTTTTTCTATGGACAAAAAACGGCTCTAAGGAAATTTGGTAGAATTAAGATAGAAAATATTTCTATGTATGAACATTTATTGAAGTTAAGATCGAAGAGATTGAGATCCTTCTCAAAAGGTGTGGGTATTTCATTTTTTTTTTCATCTTTTATAAAACAAATCTCTTTTTTTTCTCCCAATTATTGCTTTCTTATTTTCTATTTATGAAACAAAAAAACCCTACAATTATATAAATATATGAAATTTGAATACAAACAAAATAAATTAGTCTAATATATTGCTATCAAATTCTTCTCAGCCATTTTTTTTCTCTTTTCCTTTTTTTTTTCTCTAAATTTTTATAATTTAGGATGATTTTTCTGATGCAATTCTCAAAATTCCCTTTACTATTTTTTTTATAAAGAAATTAATTAGGAGATAAAGTGGTTGTGATTTGAAATTAAGTTGTTAAAAGAAATTAATATTTTTCTGATGCTATCTCATCCTCTCATGCAATGTTTCTCTTTTCCTCTTTTATTCTCTAATTTCTCTTCCATTATGTTTTTCTTTTCTCTCGTTCTTTATAATTTTTGATGATTTTTCTAAGGTATAAAACACAATTTACCTTTTCTTTTTCCTTTTTCTTTTTTATATATATTTTTTATAAAGAAATTACTTAGAAGATAAAGTGGTTGTGATTTGAAAATTAAGTTGTCAAGGAATTGTGTTTATGTTTTCAATTAAGTAAGTAAATTAAAGTTTAAACAAAGTTGTTCCATTTAGTTACATTTTAGTAGTTAGGATATTGATTTTATAAAGATATATACATATGAAGTAAAACACAATAGACAAATTGGATTACAATAGTTAACTCTCTTTCTTCTATTGTATACAGGAATTGAAAGAGAGACTTAAAAGGGTGGGTGGATTTCTTTTTGTTGAAAACAAATCTCTTTATTTCTTTCTTATTAAATGAAGAAAGAAAATGTGATTGGAGAAAAGTAAAATGTTTACACATGTAGATCATGTAGAATGCAATACTAAAAAGAGGAAACAAGTGGTTGATATGCAAAAGGTGTTTCTGTCAATTAATTAAAGTGAATCAGAGCTCACTGCATCTCTATAATTAGTTTTTGACATGTGTAATTAACTGTTTGTTTTTAATTTGTTTAATTAGAAATATATACAAAAGTCAAAATAAGTTTCTCTTATATATATATATAATTTCATGGAAATATAAAATTGCAATTGAAAAGGTTGGATTACATTTTCTATCTTCTTTGTCCAACATCGTCTACCATTGCTGCTTTTCTTTGCTTTGTAACTCTTAATTCTCCTAGTTTTTTCTATTGGCCAAAAAGAGCACTAAGGAAATTAGAATTAAGATTGAAAACATTTTGTTTGATCATACATATCCACATATGTTCTCTCATTCTTCTTCTTCTCTTTTATGATCATTTACATCAGATTTCTTTTCACTTTCTCTTTTCCCTCCTTCATTCTTTAAAACCAATCTTTTCTAATCGACAATTTTAGGATTACAATTCCTATCTTCTTCTTTCTTGAATATCTTTACTTGATTGGTTTCTTTCCTGTGTAACTATCTAAATTGTAGGTTTTTTTTTTGTTGACAAAAAGGGTTCCATGGAAATTAAATTTGTTGAATTAATTTCTATTTATAGACATTTTAGTTGAGATTGAAAAGATGAGATAGCTATAATTTTACTTTTCTTTTTTCTTTATGAAACAAATAATCTCTTAATTTTGAATACAAACAATCTCAATTATGTTATTAAGGAAATTGTATTGTTCACAATACCTTGTTATGACTCATGAAAGAAGATTTTAGGAGTGAAGAAAAGTAAAATGTTTACACATGTAAACCATGTAAAATACTGAGTCTTTTTCTTTCTTTAAAGTGAAAGTGTGTCAGAACTATAATTAAATATCTTACTTTTTTTATTTAATTTAAAATTCAAAATTCAAATAGTCTAATATATTGCTGTCAAATTCTTCACACCATTTTTTTCTCTTTTCCTTTTTTTTCTCACTAATCCTTTATAATTTAGGATGATTTTTTAATGTAGAGAGTATCAATTCTCAAAATTTTCTTTAATATTTTTTTATAAAGAAATTAATTAGGATATAAAGTGGCTGTGATTTGAAAATTAAGTTGTTAAGAAATTGTGTTTATAATTTCAATTAGTGAAGTAAATTAAAGTTTAAACAAACTAGTTCTATTTCCTTTCATTTGAGTAGTTAGCATTTTGATTTCATAATATATATAGACTGTATGTTGATGAAAAGGGGCAATCAAATTTTTTGTATGTATAGACATGAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTATCTTGATGAATCTGAATTTGAAGTACTTGTGTCGTTATTCAGGACTGAACACGATGCTGACCCCAAACAACCCAACCTCCATCAACAGCAATCCAAACACCAATCAGCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCTCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

mRNA sequence

ATGAAATTCTTTTTAATGTATAGATATGGAAGTATAGGAATTGAAGAGAGACTTGAGGTGGGACTGAACACGATGCTGACCCCAAACAACCCAACCTCCATCAACAGCAATCCAAACACCAATCAGCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCTCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

Coding sequence (CDS)

ATGAAATTCTTTTTAATGTATAGATATGGAAGTATAGGAATTGAAGAGAGACTTGAGGTGGGACTGAACACGATGCTGACCCCAAACAACCCAACCTCCATCAACAGCAATCCAAACACCAATCAGCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCTCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

Protein sequence

MKFFLMYRYGSIGIEERLEVGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Homology
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BLAST of CsaV3_3G004270 vs. NCBI nr
Match: KGN56038.1 (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 9.6e-101
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0 

Query: 21  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQ 80
           GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQC+VREQ
Sbjct: 29  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQ 88

Query: 81  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTA 140
           DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERC REQRKTVTA
Sbjct: 89  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTA 148

Query: 141 EDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 200
           EDVLWAMGKLGFD+YIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI
Sbjct: 149 EDVLWAMGKLGFDDYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 208

Query: 201 GQVPAGMFDAMGG 214
           GQVPAGMFDAMGG
Sbjct: 209 GQVPAGMFDAMGG 221

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BLAST of CsaV3_3G004270 vs. NCBI nr
Match: XP_008449191.1 (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 162/190 (85.26%), Postives = 171/190 (90.00%), Query Frame = 0 

Query: 25  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 84
           M+TPN  TSIN+ PN+N HLSNGGT+ GNSSATSPLSVA       QNQQC+VREQDQYM
Sbjct: 2   MVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAXXXXXXXQNQQCVVREQDQYM 61

Query: 85  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 144
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 145 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 204
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGMISPYGQAFQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGH 181

Query: 205 VPAGMFDAMG 213
           VPAGMFDAMG
Sbjct: 182 VPAGMFDAMG 191

[Close]
BLAST of CsaV3_3G004270 vs. NCBI nr
Match: KGN56039.1 (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 154/192 (80.21%), Postives = 157/192 (81.77%), Query Frame = 0 

Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN MLTPNNP SIN+NPNTN HLS+GGTSIGNSSATSPLSVAATANNNEQNQQC+VREQD
Sbjct: 41  LNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQD 100

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMPMAN                             YISFITSEANERC REQRKTVTAE
Sbjct: 101 QYMPMAN-----------------------------YISFITSEANERCQREQRKTVTAE 160

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQIG 201
           DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYG QVGMISPYGQAFQIG
Sbjct: 161 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIG 203

Query: 202 QVPAGMFDAMGG 214
            VPAGMFDAMGG
Sbjct: 221 HVPAGMFDAMGG 203

[Close]
BLAST of CsaV3_3G004270 vs. NCBI nr
Match: XP_023540511.1 (nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 144/194 (74.23%), Postives = 157/194 (80.93%), Query Frame = 0 

Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN +LT N  +S N+  NTN    NG     NS  T     +  A NNEQ+QQC+VREQD
Sbjct: 28  LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQD 87

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMP+ANV RIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVT E
Sbjct: 88  QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 147

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQ 201
           DVLWA+GKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQ FQ
Sbjct: 148 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 207

Query: 202 IGQVPAGMFDAMGG 214
           IG VP+GMFDAMGG
Sbjct: 208 IGHVPSGMFDAMGG 221

[Close]
BLAST of CsaV3_3G004270 vs. NCBI nr
Match: XP_023540510.1 (nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 144/194 (74.23%), Postives = 157/194 (80.93%), Query Frame = 0 

Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN +LT N  +S N+  NTN    NG     NS  T     +  A NNEQ+QQC+VREQD
Sbjct: 41  LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQD 100

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMP+ANV RIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVT E
Sbjct: 101 QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 160

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQ 201
           DVLWA+GKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQ FQ
Sbjct: 161 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 220

Query: 202 IGQVPAGMFDAMGG 214
           IG VP+GMFDAMGG
Sbjct: 221 IGHVPSGMFDAMGG 234

[Close]
BLAST of CsaV3_3G004270 vs. TAIR10
Match: AT5G47670.1 (nuclear factor Y, subunit B6)

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-43
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 65  TANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 124
           T+N  E  ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGE--EECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 125 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 174
           EANERC REQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CsaV3_3G004270 vs. TAIR10
Match: AT1G21970.1 (Histone superfamily protein)

HSP 1 Score: 171.4 bits (433), Expect = 6.5e-43
Identity = 100/184 (54.35%), Postives = 116/184 (63.04%), Query Frame = 0 

Query: 31  PTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVI 90
           P SI S  N +QH SN  T + +                     C+ REQDQYMP+ANVI
Sbjct: 13  PKSI-SELNLDQH-SNNPTPMTSXXXXXXXXXXXXXXXXXXXXXCVAREQDQYMPIANVI 72

Query: 91  RIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKL 150
           RIM++ LPSHAKISDD KETIQECVSEYISF+T EANERC REQRKT+TAED+LWAM KL
Sbjct: 73  RIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKL 132

Query: 151 GFDNYIEPLTVFLNRYRESE-----SIRTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPA 210
           GFDNY++PLTVF+NRYRE E     ++R EP   R    G  +G   P       G    
Sbjct: 133 GFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGY 192

[Close]
BLAST of CsaV3_3G004270 vs. TAIR10
Match: AT5G47640.1 (nuclear factor Y, subunit B2)

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-32
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 0 

Query: 67  NNNEQNQQCMV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 126
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 127 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           EA+++C +E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122

[Close]
BLAST of CsaV3_3G004270 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-32
Identity = 60/97 (61.86%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 78  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKT 137
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++C RE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 138 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           +  +D+LWAM  LGF++Y+EPL V+L +YRE E  +T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKT 116

[Close]
BLAST of CsaV3_3G004270 vs. TAIR10
Match: AT3G53340.1 (nuclear factor Y, subunit B10)

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-31
Identity = 59/94 (62.77%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 77  VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRK 136
           VREQD+++P+AN+ RIMKR LP + KI+ D KET+QECVSE+ISF+TSEA+++C RE+RK
Sbjct: 27  VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86

Query: 137 TVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 171
           T+  +D+LWAM  LGF++YI+PL V+L RYRE E
Sbjct: 87  TINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]
BLAST of CsaV3_3G004270 vs. Swiss-Prot
Match: sp|Q84W66|NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-42
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 65  TANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 124
           T+N  E  ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGE--EECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 125 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 174
           EANERC REQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CsaV3_3G004270 vs. Swiss-Prot
Match: sp|Q9SFD8|NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 100/184 (54.35%), Postives = 116/184 (63.04%), Query Frame = 0 

Query: 31  PTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVI 90
           P SI S  N +QH SN  T + +                     C+ REQDQYMP+ANVI
Sbjct: 13  PKSI-SELNLDQH-SNNPTPMTSXXXXXXXXXXXXXXXXXXXXXCVAREQDQYMPIANVI 72

Query: 91  RIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKL 150
           RIM++ LPSHAKISDD KETIQECVSEYISF+T EANERC REQRKT+TAED+LWAM KL
Sbjct: 73  RIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKL 132

Query: 151 GFDNYIEPLTVFLNRYRESE-----SIRTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPA 210
           GFDNY++PLTVF+NRYRE E     ++R EP   R    G  +G   P       G    
Sbjct: 133 GFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGY 192

[Close]
BLAST of CsaV3_3G004270 vs. Swiss-Prot
Match: sp|Q9FGJ3|NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-31
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 0 

Query: 67  NNNEQNQQCMV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 126
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 127 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           EA+++C +E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122

[Close]
BLAST of CsaV3_3G004270 vs. Swiss-Prot
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.5e-31
Identity = 60/97 (61.86%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 78  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKT 137
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++C RE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 138 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 175
           +  +D+LWAM  LGF++Y+EPL V+L +YRE E  +T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKT 116

[Close]
BLAST of CsaV3_3G004270 vs. Swiss-Prot
Match: sp|P25209|NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.3e-31
Identity = 58/94 (61.70%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 77  VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRK 136
           VREQD+++P+AN+ RIMK+ +P++ KI+ D KET+QECVSE+ISFITSEA+++C RE+RK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 137 TVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 171
           T+  +D+LWAM  LGF++YIEPL V+L +YRE E
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 122

[Close]
BLAST of CsaV3_3G004270 vs. TrEMBL
Match: tr|A0A0A0L2U1|A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 6.4e-101
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0 

Query: 21  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQ 80
           GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQC+VREQ
Sbjct: 29  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQ 88

Query: 81  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTA 140
           DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERC REQRKTVTA
Sbjct: 89  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTA 148

Query: 141 EDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 200
           EDVLWAMGKLGFD+YIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI
Sbjct: 149 EDVLWAMGKLGFDDYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 208

Query: 201 GQVPAGMFDAMGG 214
           GQVPAGMFDAMGG
Sbjct: 209 GQVPAGMFDAMGG 221

[Close]
BLAST of CsaV3_3G004270 vs. TrEMBL
Match: tr|A0A1S3BKV5|A0A1S3BKV5_CUCME (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 7.8e-83
Identity = 162/190 (85.26%), Postives = 171/190 (90.00%), Query Frame = 0 

Query: 25  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 84
           M+TPN  TSIN+ PN+N HLSNGGT+ GNSSATSPLSVA       QNQQC+VREQDQYM
Sbjct: 2   MVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAXXXXXXXQNQQCVVREQDQYM 61

Query: 85  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 144
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 145 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 204
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGMISPYGQAFQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGH 181

Query: 205 VPAGMFDAMG 213
           VPAGMFDAMG
Sbjct: 182 VPAGMFDAMG 191

[Close]
BLAST of CsaV3_3G004270 vs. TrEMBL
Match: tr|A0A0A0L4W1|A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.3e-76
Identity = 154/192 (80.21%), Postives = 157/192 (81.77%), Query Frame = 0 

Query: 22  LNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQD 81
           LN MLTPNNP SIN+NPNTN HLS+GGTSIGNSSATSPLSVAATANNNEQNQQC+VREQD
Sbjct: 41  LNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQD 100

Query: 82  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAE 141
           QYMPMAN                             YISFITSEANERC REQRKTVTAE
Sbjct: 101 QYMPMAN-----------------------------YISFITSEANERCQREQRKTVTAE 160

Query: 142 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQIG 201
           DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYG QVGMISPYGQAFQIG
Sbjct: 161 DVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIG 203

Query: 202 QVPAGMFDAMGG 214
            VPAGMFDAMGG
Sbjct: 221 HVPAGMFDAMGG 203

[Close]
BLAST of CsaV3_3G004270 vs. TrEMBL
Match: tr|A0A0A0L645|A0A0A0L645_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G048940 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 25  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 84
           MLTPN PTSIN+ PNTN HLSNGGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQYM
Sbjct: 2   MLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYM 61

Query: 85  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 144
           P+ANVIR M+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRSMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 145 WAMGKL 151
           WAMGKL
Sbjct: 122 WAMGKL 127

[Close]
BLAST of CsaV3_3G004270 vs. TrEMBL
Match: tr|A0A2P5SND0|A0A2P5SND0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02503 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 112/155 (72.26%), Postives = 129/155 (83.23%), Query Frame = 0 

Query: 66  ANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSE 125
           AN+N     CMVREQDQYMP+ANVIRIM+RILP+HAKISDD KETIQECVSEYISFIT E
Sbjct: 27  ANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITGE 86

Query: 126 ANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE----SIRTEPMLRRN 185
           ANERC REQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E    S+R+EPML+R 
Sbjct: 87  ANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKRG 146

Query: 186 VDYGAQVGMISPYGQAFQIGQVPAGMFD---AMGG 214
           +DYG  + M++PYG  F +G    G+FD   AMGG
Sbjct: 147 IDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGG 179

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004270 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56038.19.6e-10198.45hypothetical protein Csa_3G049440 [Cucumis sativus][more]
XP_008449191.11.2e-8285.26PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo][more]
KGN56039.11.4e-7580.21hypothetical protein Csa_3G055940 [Cucumis sativus][more]
XP_023540511.11.2e-7174.23nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp... [more]
XP_023540510.11.2e-7174.23nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp... [more]
BLAST of CsaV3_3G004270 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47670.11.0e-4377.06nuclear factor Y, subunit B6[more]
AT1G21970.16.5e-4354.35Histone superfamily protein[more]
AT5G47640.11.0e-3258.18nuclear factor Y, subunit B2[more]
AT4G14540.13.0e-3261.86nuclear factor Y, subunit B3[more]
AT3G53340.12.6e-3162.77nuclear factor Y, subunit B10[more]
BLAST of CsaV3_3G004270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84W66|NFYB6_ARATH1.8e-4277.06Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q9SFD8|NFYB9_ARATH1.2e-4154.35Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q9FGJ3|NFYB2_ARATH1.9e-3158.18Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|O23310|NFYB3_ARATH5.5e-3161.86Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|P25209|NFYB_MAIZE9.3e-3161.70Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1[more]
BLAST of CsaV3_3G004270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2U1|A0A0A0L2U1_CUCSA6.4e-10198.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1[more]
tr|A0A1S3BKV5|A0A1S3BKV5_CUCME7.8e-8385.26nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911... [more]
tr|A0A0A0L4W1|A0A0A0L4W1_CUCSA9.3e-7680.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1[more]
tr|A0A0A0L645|A0A0A0L645_CUCSA1.2e-5489.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G048940 PE=4 SV=1[more]
tr|A0A2P5SND0|A0A2P5SND0_GOSBA4.5e-5472.26Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02503 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004270.1CsaV3_3G004270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 149..167
score: 32.06
coord: 130..148
score: 32.3
coord: 111..129
score: 47.73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..59
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 39..195
NoneNo IPR availablePANTHERPTHR11064:SF79NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATEDcoord: 39..195
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 83..147
e-value: 1.4E-24
score: 86.0
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 70..182
e-value: 1.6E-39
score: 136.9
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 80..175
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 114..130

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G004270Silver-seed gourdcarcucB0008
CsaV3_3G004270Silver-seed gourdcarcucB0621
CsaV3_3G004270Cucumber (Gy14) v2cgybcucB117
CsaV3_3G004270Cucumber (Gy14) v1cgycucB017
CsaV3_3G004270Cucurbita maxima (Rimu)cmacucB0381
CsaV3_3G004270Cucurbita maxima (Rimu)cmacucB0659
CsaV3_3G004270Cucurbita maxima (Rimu)cmacucB0974
CsaV3_3G004270Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G004270Cucurbita moschata (Rifu)cmocucB0378
CsaV3_3G004270Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G004270Cucurbita pepo (Zucchini)cpecucB0256
CsaV3_3G004270Cucurbita pepo (Zucchini)cpecucB0342
CsaV3_3G004270Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G004270Cucurbita pepo (Zucchini)cpecucB1064
CsaV3_3G004270Wild cucumber (PI 183967)cpicucB144
CsaV3_3G004270Bottle gourd (USVL1VR-Ls)cuclsiB175
CsaV3_3G004270Bottle gourd (USVL1VR-Ls)cuclsiB217
CsaV3_3G004270Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G004270Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G004270Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G004270Watermelon (97103) v1cucwmB210
CsaV3_3G004270Watermelon (97103) v2cucwmbB182
CsaV3_3G004270Wax gourdcucwgoB328
CsaV3_3G004270Wax gourdcucwgoB223