CsaV3_3G002230.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G002230.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 1794986 .. 1795279 (-)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATACATGTCACGTCCAATGGTGGTGTCTTTGGAGATGTCACCTTGTTCACTTCTAGTGGCTTATTTTTGCTTTCAACCATCATTCTTTCAATCTCTCTCATTTCCATGATCATATTTGCTTGCAGCGACTCTCATGATACGAAAAAGAGAAGACGTGGCAACGGTGGTGGTGATGGTGGTGGAGGCTGCGGGGGTGATGGTGGAGGAGGTGATGGAGGAGGTGGTGGAGGTTGTGGTGGTGGAGGAGGTGGCGGCTGTGGAGGGGGAGGGGGAGGGGGATGA

mRNA sequence

ATGGGAAGGCCAATACATGTCACGTCCAATGGTGGTGTCTTTGGAGATGTCACCTTCGACTCTCATGATACGAAAAAGAGAAGACGTGGCAACGGTGGTGGTGATGGTGGTGGAGGCTGCGGGGGTGATGGTGGAGGAGGTGATGGAGGAGGTGGTGGAGGTTGTGGTGGTGGAGGAGGTGGCGGCTGTGGAGGGGGAGGGGGAGGGGGATGA

Coding sequence (CDS)

ATGGGAAGGCCAATACATGTCACGTCCAATGGTGGTGTCTTTGGAGATGTCACCTTCGACTCTCATGATACGAAAAAGAGAAGACGTGGCAACGGTGGTGGTGATGGTGGTGGAGGCTGCGGGGGTGATGGTGGAGGAGGTGATGGAGGAGGTGGTGGAGGTTGTGGTGGTGGAGGAGGTGGCGGCTGTGGAGGGGGAGGGGGAGGGGGATGA

Protein sequence

MGRPIHVTSNGGVFGDVTFDSHDTKKRRRGNGGGDGGGGCGGDGGGGDGGGGGGCGGGGGGGCGGGGGGG
Homology
[Close]
BLAST of CsaV3_3G002230.1 vs. NCBI nr
Match: KGN55816.1 (hypothetical protein Csa_3G017100 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 26
          MGRPIHVTSNGGVFGDVTFDSHDTK
Sbjct: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 25

[Close]
BLAST of CsaV3_3G002230.1 vs. TrEMBL
Match: tr|A0A0A0L6Q5|A0A0A0L6Q5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017100 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 26
          MGRPIHVTSNGGVFGDVTFDSHDTK
Sbjct: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 25

The following BLAST results are available for this feature:
BLAST of CsaV3_3G002230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55816.11.8e-05100.00hypothetical protein Csa_3G017100 [Cucumis sativus][more]
BLAST of CsaV3_3G002230.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G002230.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G002230.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6Q5|A0A0A0L6Q5_CUCSA1.2e-05100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017100 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G002230CsaV3_3G002230gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G002230.1.cds2CsaV3_3G002230.1.cds2CDS
CsaV3_3G002230.1.cds1CsaV3_3G002230.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G002230.1.exon2CsaV3_3G002230.1.exon2exon
CsaV3_3G002230.1.exon1CsaV3_3G002230.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G002230.1CsaV3_3G002230.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43