CsaV3_3G002230 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G002230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 1794986 .. 1795279 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATACATGTCACGTCCAATGGTGGTGTCTTTGGAGATGTCACCTTGTTCACTTCTAGTGGCTTATTTTTGCTTTCAACCATCATTCTTTCAATCTCTCTCATTTCCATGATCATATTTGCTTGCAGCGACTCTCATGATACGAAAAAGAGAAGACGTGGCAACGGTGGTGGTGATGGTGGTGGAGGCTGCGGGGGTGATGGTGGAGGAGGTGATGGAGGAGGTGGTGGAGGTTGTGGTGGTGGAGGAGGTGGCGGCTGTGGAGGGGGAGGGGGAGGGGGATGA

mRNA sequence

ATGGGAAGGCCAATACATGTCACGTCCAATGGTGGTGTCTTTGGAGATGTCACCTTCGACTCTCATGATACGAAAAAGAGAAGACGTGGCAACGGTGGTGGTGATGGTGGTGGAGGCTGCGGGGGTGATGGTGGAGGAGGTGATGGAGGAGGTGGTGGAGGTTGTGGTGGTGGAGGAGGTGGCGGCTGTGGAGGGGGAGGGGGAGGGGGATGA

Coding sequence (CDS)

ATGGGAAGGCCAATACATGTCACGTCCAATGGTGGTGTCTTTGGAGATGTCACCTTCGACTCTCATGATACGAAAAAGAGAAGACGTGGCAACGGTGGTGGTGATGGTGGTGGAGGCTGCGGGGGTGATGGTGGAGGAGGTGATGGAGGAGGTGGTGGAGGTTGTGGTGGTGGAGGAGGTGGCGGCTGTGGAGGGGGAGGGGGAGGGGGATGA

Protein sequence

MGRPIHVTSNGGVFGDVTFDSHDTKKRRRGNGGGDGGGGCGGDGGGGDGGGGGGCGGGGGGGCGGGGGGG
BLAST of CsaV3_3G002230 vs. NCBI nr
Match: KGN55816.1 (hypothetical protein Csa_3G017100 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 26
          MGRPIHVTSNGGVFGDVTFDSHDTK
Sbjct: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 25

BLAST of CsaV3_3G002230 vs. TrEMBL
Match: tr|A0A0A0L6Q5|A0A0A0L6Q5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017100 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 26
          MGRPIHVTSNGGVFGDVTFDSHDTK
Sbjct: 1  MGRPIHVTSNGGVFGDVTFDSHDTK 25

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55816.11.8e-05100.00hypothetical protein Csa_3G017100 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L6Q5|A0A0A0L6Q5_CUCSA1.2e-05100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017100 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G002230.1CsaV3_3G002230.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G002230CSPI03G02200Wild cucumber (PI 183967)cpicucB144
CsaV3_3G002230CsGy3G002100Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G002230Cucumber (Chinese Long) v3cuccucB109
CsaV3_3G002230Cucumber (Chinese Long) v3cuccucB113
CsaV3_3G002230Silver-seed gourdcarcucB0599
CsaV3_3G002230Silver-seed gourdcarcucB0745
CsaV3_3G002230Silver-seed gourdcarcucB0821
CsaV3_3G002230Cucumber (Gy14) v2cgybcucB119
CsaV3_3G002230Cucumber (Gy14) v1cgycucB488
CsaV3_3G002230Cucumber (Gy14) v1cgycucB499
CsaV3_3G002230Cucurbita maxima (Rimu)cmacucB0297
CsaV3_3G002230Cucurbita maxima (Rimu)cmacucB0372
CsaV3_3G002230Cucurbita maxima (Rimu)cmacucB0620
CsaV3_3G002230Cucurbita maxima (Rimu)cmacucB0718
CsaV3_3G002230Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G002230Cucurbita moschata (Rifu)cmocucB0288
CsaV3_3G002230Cucurbita moschata (Rifu)cmocucB0371
CsaV3_3G002230Cucurbita moschata (Rifu)cmocucB0705
CsaV3_3G002230Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G002230Cucurbita pepo (Zucchini)cpecucB0246
CsaV3_3G002230Cucurbita pepo (Zucchini)cpecucB0764
CsaV3_3G002230Cucurbita pepo (Zucchini)cpecucB0895
CsaV3_3G002230Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G002230Cucurbita pepo (Zucchini)cpecucB1063
CsaV3_3G002230Wild cucumber (PI 183967)cpicucB147
CsaV3_3G002230Wild cucumber (PI 183967)cpicucB151
CsaV3_3G002230Bottle gourd (USVL1VR-Ls)cuclsiB237
CsaV3_3G002230Bottle gourd (USVL1VR-Ls)cuclsiB244
CsaV3_3G002230Bottle gourd (USVL1VR-Ls)cuclsiB250
CsaV3_3G002230Melon (DHL92) v3.5.1cucmeB222
CsaV3_3G002230Melon (DHL92) v3.5.1cucmeB244
CsaV3_3G002230Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G002230Melon (DHL92) v3.6.1cucmedB215
CsaV3_3G002230Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G002230Melon (DHL92) v3.6.1cucmedB243
CsaV3_3G002230Watermelon (Charleston Gray)cucwcgB184
CsaV3_3G002230Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G002230Watermelon (Charleston Gray)cucwcgB232
CsaV3_3G002230Watermelon (97103) v1cucwmB193
CsaV3_3G002230Watermelon (97103) v1cucwmB209
CsaV3_3G002230Watermelon (97103) v1cucwmB249
CsaV3_3G002230Watermelon (97103) v2cucwmbB182
CsaV3_3G002230Watermelon (97103) v2cucwmbB255
CsaV3_3G002230Wax gourdcucwgoB242