CsaV3_2G036000.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G036000.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 24195915 .. 24196163 (-)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTTTTCTCCTCCTTCTGTTGTTGAACCATCTCAAGTTGAAGCTTCAAATGAAAATATTACTTCACAAACTGAGAGCAATCCTCTCTCCTTCTACTGATGTTGGAGACAATATTGCACATCATCCTATGAGTTCTCATTTAGGTTCTTCTCAGAATGATGTTGTAGTTTTGCCACTTGCCATTATATTCCCCATGCTGGTCTTTGATGATCTACACGACAATGTCAAACTCTTGGATTTTTAA

mRNA sequence

ATGAAGTTTTTTCTCCTCCTTCTGTTGTTGAACCATCTCAAGTTGAAGCTTCAAATGAAAATATTACTTCACAAACTGAGAGCAATCCTCTCTCCTTCTACTGATGTTGGAGACAATATTGCACATCATCCTATGAGTTCTCATTTAGGTTCTTCTCAGAATGATGTTGTAGTTTTGCCACTTGCCATTATATTCCCCATGCTGGTCTTTGATGATCTACACGACAATGTCAAACTCTTGGATTTTTAA

Coding sequence (CDS)

ATGAAGTTTTTTCTCCTCCTTCTGTTGTTGAACCATCTCAAGTTGAAGCTTCAAATGAAAATATTACTTCACAAACTGAGAGCAATCCTCTCTCCTTCTACTGATGTTGGAGACAATATTGCACATCATCCTATGAGTTCTCATTTAGGTTCTTCTCAGAATGATGTTGTAGTTTTGCCACTTGCCATTATATTCCCCATGCTGGTCTTTGATGATCTACACGACAATGTCAAACTCTTGGATTTTTAA

Protein sequence

MKFFLLLLLLNHLKLKLQMKILLHKLRAILSPSTDVGDNIAHHPMSSHLGSSQNDVVVLPLAIIFPMLVFDDLHDNVKLLDF

Homology

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BLAST of CsaV3_2G036000.1 vs. NCBI nr
Match: KGN63360.1 (hypothetical protein Csa_2G432280 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MKFFLLLLLLNHLKLKLQMKILLHKLRAILSPSTDVGDNIAHHPMSSHLGSSQNDVVVLP 60
          MKFFLLLLLLNHLKLKLQMKILLHKLRAILSPSTDVGDNIAHHPMSSHLGSSQNDVVVLP
Sbjct: 1  MKFFLLLLLLNHLKLKLQMKILLHKLRAILSPSTDVGDNIAHHPMSSHLGSSQNDVVVLP 60

Query: 61 LAIIFPMLVFDDLHDNVKLLDF 83
          LAIIFPMLVFDDLHDNVKLLDF
Sbjct: 61 LAIIFPMLVFDDLHDNVKLLDF 82

[Close]

BLAST of CsaV3_2G036000.1 vs. TrEMBL
Match: tr|A0A0A0LN78|A0A0A0LN78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432280 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MKFFLLLLLLNHLKLKLQMKILLHKLRAILSPSTDVGDNIAHHPMSSHLGSSQNDVVVLP 60
          MKFFLLLLLLNHLKLKLQMKILLHKLRAILSPSTDVGDNIAHHPMSSHLGSSQNDVVVLP
Sbjct: 1  MKFFLLLLLLNHLKLKLQMKILLHKLRAILSPSTDVGDNIAHHPMSSHLGSSQNDVVVLP 60

Query: 61 LAIIFPMLVFDDLHDNVKLLDF 83
          LAIIFPMLVFDDLHDNVKLLDF
Sbjct: 61 LAIIFPMLVFDDLHDNVKLLDF 82

The following BLAST results are available for this feature:

BLAST of CsaV3_2G036000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63360.1	1.2e-34	100.00	hypothetical protein Csa_2G432280 [Cucumis sativus]	[more]

BLAST of CsaV3_2G036000.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G036000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G036000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LN78\|A0A0A0LN78_CUCSA	8.2e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G036000	CsaV3_2G036000	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G036000.1.cds1	CsaV3_2G036000.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G036000.1.exon1	CsaV3_2G036000.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G036000.1	CsaV3_2G036000.1-protein	polypeptide