CsaV3_2G034060.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G034060.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	2OG-Fe(II) oxygenase
Location	chr2 : 22559811 .. 22560658 (+)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTATCAATAGTGTATCAATTTTATCGTACTCGTAAATATTTTGAAAATGTTGATAAAATTTTTTTTTGTCATGAGGAAATATATGTTTGCACATGTGATGTGATGGGATGGGATTGATAGATTTGAAGAATCAAAATCCTCAAAAACATAGAAGAGAAAGTTAAGAGAATGATGCTATATACCAATTCCTCATCTTCAAAGATGGCAAACCCACATATACTTATTAACAAATCAAAGGAGATTGAGAAAAAAAATGGATACAAAACAAGTTTAAAGACAAAAGACAATCAGATTTAAGGGAAAGAAAGAAAAAAAAAGAGAGAGAGAAAGATGTGAAATTAGGAGCCCATATAAACATGAACACGAACAGCCAACAAGAAGATACAGATCAATGCAAAATAGAGAATTGAATGAACCAAAATGGAGACTCCACTCGTCTGAAAATTCCCAAATTCAACGAACCGACTCTTCCCAGGCATCTGAACCAACAAGCCCGGAGTTAGCAGAACGAACAACATCACCGCTACAAAAACCGGACCCCAATCCGCCATTGATCTTTCTCGATAGTACCTCTCCCTCTCAACAACAAACCAACAGAGAGACGATCAGGAACATATCAAAAGCAATGGAAGCTAAGGTGTTAATAGCGGTGAAGAAAAGGACAAAATTATGGTGGAGGGATGACTTGGAAAGTTGAAGCTTAGTGAATGAAGTTATTCAGATTCACATGTTTTCTTTTTTTGTTTTTTCATAAGTGGGGTTTGCTTAATTGTATTATCTTTGTGGTTTAATTGATTTACAAATCATAATCCATCAAATTTGTTATCTAACATTCAAATACATCCA

mRNA sequence

ATGCAAAATAGAGAATTGAATGAACCAAAATGGAGACTCCACTCGTCTGAAAATTCCCAAATTCAACGAACCGACTCTTCCCAGGCATCTGAACCAACAAGCCCGGAGTTAGCAGAACGAACAACATCACCGCTACAAAAACCGGACCCCAATCCGCCATTGATCTTTCTCGATAGTACCTCTCCCTCTCAACAACAAACCAACAGAGAGACGATCAGGAACATATCAAAAGCAATGGAAGCTAAGGTGTTAATAGCGGTGAAGAAAAGGACAAAATTATGGTGGAGGGATGACTTGGAAAGTTGA

Coding sequence (CDS)

ATGCAAAATAGAGAATTGAATGAACCAAAATGGAGACTCCACTCGTCTGAAAATTCCCAAATTCAACGAACCGACTCTTCCCAGGCATCTGAACCAACAAGCCCGGAGTTAGCAGAACGAACAACATCACCGCTACAAAAACCGGACCCCAATCCGCCATTGATCTTTCTCGATAGTACCTCTCCCTCTCAACAACAAACCAACAGAGAGACGATCAGGAACATATCAAAAGCAATGGAAGCTAAGGTGTTAATAGCGGTGAAGAAAAGGACAAAATTATGGTGGAGGGATGACTTGGAAAGTTGA

Protein sequence

MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDSTSPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES

Homology

[Close]

BLAST of CsaV3_2G034060.1 vs. NCBI nr
Match: KGN63162.1 (2OG-Fe(II) oxygenase [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60
           MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST
Sbjct: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60

Query: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 102
           SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES
Sbjct: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 101

[Close]

BLAST of CsaV3_2G034060.1 vs. TrEMBL
Match: tr|A0A0A0LQU0|A0A0A0LQU0_CUCSA (2OG-Fe(II) oxygenase OS=Cucumis sativus OX=3659 GN=Csa_2G406110 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.8e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60
           MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST
Sbjct: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60

Query: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 102
           SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES
Sbjct: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 101

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63162.1	1.3e-46	100.00	2OG-Fe(II) oxygenase [Cucumis sativus]	[more]

BLAST of CsaV3_2G034060.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQU0\|A0A0A0LQU0_CUCSA	8.8e-47	100.00	2OG-Fe(II) oxygenase OS=Cucumis sativus OX=3659 GN=Csa_2G406110 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G034060	CsaV3_2G034060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G034060.1.exon1	CsaV3_2G034060.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G034060.1.cds1	CsaV3_2G034060.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G034060.1	CsaV3_2G034060.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..45