CsaV3_2G034060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G034060
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description2OG-Fe(II) oxygenase
Locationchr2 : 22559811 .. 22560658 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTATCAATAGTGTATCAATTTTATCGTACTCGTAAATATTTTGAAAATGTTGATAAAATTTTTTTTTGTCATGAGGAAATATATGTTTGCACATGTGATGTGATGGGATGGGATTGATAGATTTGAAGAATCAAAATCCTCAAAAACATAGAAGAGAAAGTTAAGAGAATGATGCTATATACCAATTCCTCATCTTCAAAGATGGCAAACCCACATATACTTATTAACAAATCAAAGGAGATTGAGAAAAAAAATGGATACAAAACAAGTTTAAAGACAAAAGACAATCAGATTTAAGGGAAAGAAAGAAAAAAAAAGAGAGAGAGAAAGATGTGAAATTAGGAGCCCATATAAACATGAACACGAACAGCCAACAAGAAGATACAGATCAATGCAAAATAGAGAATTGAATGAACCAAAATGGAGACTCCACTCGTCTGAAAATTCCCAAATTCAACGAACCGACTCTTCCCAGGCATCTGAACCAACAAGCCCGGAGTTAGCAGAACGAACAACATCACCGCTACAAAAACCGGACCCCAATCCGCCATTGATCTTTCTCGATAGTACCTCTCCCTCTCAACAACAAACCAACAGAGAGACGATCAGGAACATATCAAAAGCAATGGAAGCTAAGGTGTTAATAGCGGTGAAGAAAAGGACAAAATTATGGTGGAGGGATGACTTGGAAAGTTGAAGCTTAGTGAATGAAGTTATTCAGATTCACATGTTTTCTTTTTTTGTTTTTTCATAAGTGGGGTTTGCTTAATTGTATTATCTTTGTGGTTTAATTGATTTACAAATCATAATCCATCAAATTTGTTATCTAACATTCAAATACATCCA

mRNA sequence

ATGCAAAATAGAGAATTGAATGAACCAAAATGGAGACTCCACTCGTCTGAAAATTCCCAAATTCAACGAACCGACTCTTCCCAGGCATCTGAACCAACAAGCCCGGAGTTAGCAGAACGAACAACATCACCGCTACAAAAACCGGACCCCAATCCGCCATTGATCTTTCTCGATAGTACCTCTCCCTCTCAACAACAAACCAACAGAGAGACGATCAGGAACATATCAAAAGCAATGGAAGCTAAGGTGTTAATAGCGGTGAAGAAAAGGACAAAATTATGGTGGAGGGATGACTTGGAAAGTTGA

Coding sequence (CDS)

ATGCAAAATAGAGAATTGAATGAACCAAAATGGAGACTCCACTCGTCTGAAAATTCCCAAATTCAACGAACCGACTCTTCCCAGGCATCTGAACCAACAAGCCCGGAGTTAGCAGAACGAACAACATCACCGCTACAAAAACCGGACCCCAATCCGCCATTGATCTTTCTCGATAGTACCTCTCCCTCTCAACAACAAACCAACAGAGAGACGATCAGGAACATATCAAAAGCAATGGAAGCTAAGGTGTTAATAGCGGTGAAGAAAAGGACAAAATTATGGTGGAGGGATGACTTGGAAAGTTGA

Protein sequence

MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDSTSPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES
Homology
[Close]
BLAST of CsaV3_2G034060 vs. NCBI nr
Match: KGN63162.1 (2OG-Fe(II) oxygenase [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60
           MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST
Sbjct: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60

Query: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 102
           SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES
Sbjct: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 101

[Close]
BLAST of CsaV3_2G034060 vs. TrEMBL
Match: tr|A0A0A0LQU0|A0A0A0LQU0_CUCSA (2OG-Fe(II) oxygenase OS=Cucumis sativus OX=3659 GN=Csa_2G406110 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.8e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60
           MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST
Sbjct: 1   MQNRELNEPKWRLHSSENSQIQRTDSSQASEPTSPELAERTTSPLQKPDPNPPLIFLDST 60

Query: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 102
           SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES
Sbjct: 61  SPSQQQTNRETIRNISKAMEAKVLIAVKKRTKLWWRDDLES 101

The following BLAST results are available for this feature:
BLAST of CsaV3_2G034060 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63162.11.3e-46100.002OG-Fe(II) oxygenase [Cucumis sativus][more]
BLAST of CsaV3_2G034060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQU0|A0A0A0LQU0_CUCSA8.8e-47100.002OG-Fe(II) oxygenase OS=Cucumis sativus OX=3659 GN=Csa_2G406110 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G034060.1CsaV3_2G034060.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..45

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G034060MELO3C029838.2Melon (DHL92) v3.6.1cucmedB115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G034060Watermelon (Charleston Gray)cucwcgB116
CsaV3_2G034060Watermelon (97103) v1cucwmB172
CsaV3_2G034060Watermelon (97103) v2cucwmbB118
CsaV3_2G034060Wax gourdcucwgoB171
CsaV3_2G034060Silver-seed gourdcarcucB0018
CsaV3_2G034060Silver-seed gourdcarcucB1054
CsaV3_2G034060Cucumber (Gy14) v2cgybcucB065
CsaV3_2G034060Cucumber (Gy14) v1cgycucB092
CsaV3_2G034060Cucurbita maxima (Rimu)cmacucB0326
CsaV3_2G034060Cucurbita maxima (Rimu)cmacucB0827
CsaV3_2G034060Cucurbita moschata (Rifu)cmocucB0321
CsaV3_2G034060Cucurbita moschata (Rifu)cmocucB0812
CsaV3_2G034060Cucurbita pepo (Zucchini)cpecucB0195
CsaV3_2G034060Cucurbita pepo (Zucchini)cpecucB0482
CsaV3_2G034060Wild cucumber (PI 183967)cpicucB081
CsaV3_2G034060Bottle gourd (USVL1VR-Ls)cuclsiB127
CsaV3_2G034060Melon (DHL92) v3.5.1cucmeB121