CsaV3_2G031040.1 (mRNA) Cucumber (Chinese Long) v3

NameCsaV3_2G031040.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 20412526 .. 20412814 (+)
Sequence length289
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCGAGCGAACAAGAAGAAGAGCCACAGCAGCAAGGGATGCCACTGGCAGGGATGCAACAACCGCTACGTGGGGTGGAAGAGCCGCCAACGGGGTACTTCCTCTCGTCGATTACCTTCTTTCTCCTTCGAGATCAGATTCAGGTGGGGACTTTCTGCCTTGTGCCTCTTTGGTCGACTTTCCTTTGTCCCTTCGTTCCGGGAATGGTGTGATCTTTCTATCATCACAAGTATTTCAAAGAAAGAACAAGAGAAAGGAGATTGAGAAACTAAACTCGCTCGACCCAA

mRNA sequence

CTTTCCGAGCGAACAAGAAGAAGAGCCACAGCAGCAAGGGATGCCACTGGCAGGGATGCAACAACCGCTACGTGGGGTGGAAGAGCCGCCAACGGGGTACTTCCTCTCGTCGATTACCTTCTTTCTCCTTCGAGATCAGATTCAGGTGGGGACTTTCTGCCTTGTGCCTCTTTGGTCGACTTTCCTTTGTCCCTTCGTTCCGGGAATGGTGTGATCTTTCTATCATCACAAGTATTTCAAAGAAAGAACAAGAGAAAGGAGATTGAGAAACTAAACTCGCTCGACCCAA

Coding sequence (CDS)

CTTTCCGAGCGAACAAGAAGAAGAGCCACAGCAGCAAGGGATGCCACTGGCAGGGATGCAACAACCGCTACGTGGGGTGGAAGAGCCGCCAACGGGGTACTTCCTCTCGTCGATTACCTTCTTTCTCCTTCGAGATCAGATTCAGGTGGGGACTTTCTGCCTTGTGCCTCTTTGGTCGACTTTCCTTTGTCCCTTCGTTCCGGGAATGGTGTGATCTTTCTATCATCACAAGTATTTCAAAGAAAGAACAAGAGAAAGGAGATTGAGAAACTAAACTCGCTCGACCCAA

Protein sequence

LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVDFPLSLRSGNGVIFLSSQVFQRKNKRKEIEKLNSLDPX
BLAST of CsaV3_2G031040.1 vs. NCBI nr
Match: KGN62832.1 (hypothetical protein Csa_2G375230 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0

Query: 1   LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 60
           LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD
Sbjct: 16  LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 75

Query: 61  FPLSLRSGNGVIFLSSQVFQRKNKRKEIEKLNSLDP 97
           FPLSLRSG GVIFLSSQVFQRKNKRKEIEKLNSLDP
Sbjct: 76  FPLSLRSGYGVIFLSSQVFQRKNKRKEIEKLNSLDP 111

BLAST of CsaV3_2G031040.1 vs. TrEMBL
Match: tr|A0A0A0LPT9|A0A0A0LPT9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375230 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0

Query: 1   LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 60
           LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD
Sbjct: 16  LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 75

Query: 61  FPLSLRSGNGVIFLSSQVFQRKNKRKEIEKLNSLDP 97
           FPLSLRSG GVIFLSSQVFQRKNKRKEIEKLNSLDP
Sbjct: 76  FPLSLRSGYGVIFLSSQVFQRKNKRKEIEKLNSLDP 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN62832.12.9e-4398.96hypothetical protein Csa_2G375230 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LPT9|A0A0A0LPT9_CUCSA1.9e-4398.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375230 PE=4 SV=1[more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G031040CsaV3_2G031040gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G031040.1.exon1CsaV3_2G031040.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G031040.1.cds1CsaV3_2G031040.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G031040.1CsaV3_2G031040.1-proteinpolypeptide


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23