CsaV3_2G031040 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G031040
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 20412526 .. 20412814 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCGAGCGAACAAGAAGAAGAGCCACAGCAGCAAGGGATGCCACTGGCAGGGATGCAACAACCGCTACGTGGGGTGGAAGAGCCGCCAACGGGGTACTTCCTCTCGTCGATTACCTTCTTTCTCCTTCGAGATCAGATTCAGGTGGGGACTTTCTGCCTTGTGCCTCTTTGGTCGACTTTCCTTTGTCCCTTCGTTCCGGGAATGGTGTGATCTTTCTATCATCACAAGTATTTCAAAGAAAGAACAAGAGAAAGGAGATTGAGAAACTAAACTCGCTCGACCCAA

mRNA sequence

CTTTCCGAGCGAACAAGAAGAAGAGCCACAGCAGCAAGGGATGCCACTGGCAGGGATGCAACAACCGCTACGTGGGGTGGAAGAGCCGCCAACGGGGTACTTCCTCTCGTCGATTACCTTCTTTCTCCTTCGAGATCAGATTCAGGTGGGGACTTTCTGCCTTGTGCCTCTTTGGTCGACTTTCCTTTGTCCCTTCGTTCCGGGAATGGTGTGATCTTTCTATCATCACAAGTATTTCAAAGAAAGAACAAGAGAAAGGAGATTGAGAAACTAAACTCGCTCGACCCAA

Coding sequence (CDS)

CTTTCCGAGCGAACAAGAAGAAGAGCCACAGCAGCAAGGGATGCCACTGGCAGGGATGCAACAACCGCTACGTGGGGTGGAAGAGCCGCCAACGGGGTACTTCCTCTCGTCGATTACCTTCTTTCTCCTTCGAGATCAGATTCAGGTGGGGACTTTCTGCCTTGTGCCTCTTTGGTCGACTTTCCTTTGTCCCTTCGTTCCGGGAATGGTGTGATCTTTCTATCATCACAAGTATTTCAAAGAAAGAACAAGAGAAAGGAGATTGAGAAACTAAACTCGCTCGACCCAA

Protein sequence

LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVDFPLSLRSGNGVIFLSSQVFQRKNKRKEIEKLNSLDPX

Homology

[Close]

BLAST of CsaV3_2G031040 vs. NCBI nr
Match: KGN62832.1 (hypothetical protein Csa_2G375230 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 60
           LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD
Sbjct: 16  LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 75

Query: 61  FPLSLRSGNGVIFLSSQVFQRKNKRKEIEKLNSLDP 97
           FPLSLRSG GVIFLSSQVFQRKNKRKEIEKLNSLDP
Sbjct: 76  FPLSLRSGYGVIFLSSQVFQRKNKRKEIEKLNSLDP 111

[Close]

BLAST of CsaV3_2G031040 vs. TrEMBL
Match: tr|A0A0A0LPT9|A0A0A0LPT9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375230 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 60
           LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD
Sbjct: 16  LSERTRRRATAARDATGRDATTATWGGRAANGVLPLVDYLLSPSRSDSGGDFLPCASLVD 75

Query: 61  FPLSLRSGNGVIFLSSQVFQRKNKRKEIEKLNSLDP 97
           FPLSLRSG GVIFLSSQVFQRKNKRKEIEKLNSLDP
Sbjct: 76  FPLSLRSGYGVIFLSSQVFQRKNKRKEIEKLNSLDP 111

The following BLAST results are available for this feature:

BLAST of CsaV3_2G031040 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62832.1	2.9e-43	98.96	hypothetical protein Csa_2G375230 [Cucumis sativus]	[more]

BLAST of CsaV3_2G031040 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G031040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G031040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPT9\|A0A0A0LPT9_CUCSA	1.9e-43	98.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375230 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G031040.1	CsaV3_2G031040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G031040	CSPI02G22410	Wild cucumber (PI 183967)	cpicucB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G031040	Silver-seed gourd	carcucB0065
CsaV3_2G031040	Silver-seed gourd	carcucB1015
CsaV3_2G031040	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G031040	Cucumber (Gy14) v1	cgycucB247
CsaV3_2G031040	Cucurbita maxima (Rimu)	cmacucB0192
CsaV3_2G031040	Cucurbita maxima (Rimu)	cmacucB0927
CsaV3_2G031040	Cucurbita moschata (Rifu)	cmocucB0176
CsaV3_2G031040	Cucurbita moschata (Rifu)	cmocucB0919
CsaV3_2G031040	Cucurbita pepo (Zucchini)	cpecucB0107
CsaV3_2G031040	Cucurbita pepo (Zucchini)	cpecucB1004
CsaV3_2G031040	Bottle gourd (USVL1VR-Ls)	cuclsiB152
CsaV3_2G031040	Melon (DHL92) v3.5.1	cucmeB124
CsaV3_2G031040	Melon (DHL92) v3.6.1	cucmedB118
CsaV3_2G031040	Watermelon (Charleston Gray)	cucwcgB173
CsaV3_2G031040	Watermelon (97103) v1	cucwmB121
CsaV3_2G031040	Watermelon (97103) v2	cucwmbB160
CsaV3_2G031040	Wax gourd	cucwgoB172