CsaV3_2G024220.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCAAACTCGAAATAGTTCGAAAGAGAAAGAAAAGAAAAGTGAACGGTGAATAAGAAAAGCAAAGACATTGTAAGACACCCCATTACAGAAAGATCAAAAAAGGGATAAAGAAGTAAAGAATGGTTTAAGAAATTAAATAAACTAAAGGAAAAGAGAGAGAGAGAGAGATGTGATGATAAAAGAAGAAAAAGTGAAGCATAAGCTGTCCTTTAATATTTCTTTCTTTTCTTTTCTTTTCTTTTTAAATCTCTTAAACCCCAAATTCATTCATTCATTCATTCTGTCTATCACAAATTCACAAATTATGAGATCCATGAAGAGAAGAAATCACTCCAAATCAAAACCCACTGCTCCACCGGCCGATCTTCTCGTCTGTTTTCCTGCACGTGCTCATCTCACTCTTCTCCCAAGTCCCGCCAGACCTCCCGCCGAACCCCATCGTCGTCACTACCGGAAAGCTCAACCAAGTCCTCTTCCATGGGCTAAGGAGATGTCGTCGGAGCCCACTTCCCCCAAGGTCACCTGCGCCGGCCAGATCAAAATCAGACCTCATTCTCATCGATCAACCAAGAATTGGCAATCGGTTATGGAAGAAATCGAGCGAATTCACAACAAAAAGAAAAATCCAATTCGAAATCAAAATCCTTTCGGTTTCAAGAGAGAAATTGTTAATTTCCTCTCGTGTTTACGGGGATTCCGTTTTGATTTCCGTTGTTTCAGAGGCTTCCCTCAATCCGACATTACAACAGATGATGAGGATGATGAAGAAGAAGTATTCGAACAACACGAACCCGAATCCGAATCCCAATCAGAATCAGAAGAAGAACCCACAAGAGGAAGAACGATGTTCTCAGAATGGTTCATGGTTTTACAGGAAGGCGAAGAAGAAACCAAACCCATAAACAACGACGCCGTTTCTTCACTCGAATTCCAACCTTCCTCTGTTTCTGTTCCTCCCCCAAATGCTCTCTTACTTATGCGTTGCAGGTCAGCCCCAAATTCTCTTTTACGAAAACCAAAACAACAAGAAGAAAAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAATCGAAAATCAGCTTGAAGTTGTTAATGGAGGAAGAGAAAGAAATGGTGACTGCGAAGAAGAAAAGCTTGATGGTAATGGATTATGATGCTGATTTTTACAAACTTTCATCAGACATTGCTAAAGAAACATGGGTTGTGAGTGGATCAAGTACCAGTAGTAGTAGTAGTAGATGTAATGACGATCCATTGTTGAGAAGTCGAAGCTGGAAGAGATGATGAAGATCGAACAACTCAAATCAATAAAAAATTAAAAGAAAAAACTCTTGTGCTCTGCTTCCCTTGTTTTCTAATTTCCATGAAATTTCTGCCAAGAACTTGAAAACCCCACATGAGATTTTTGAAGATCTGATATGGGTTTTGTTTACTTTCTTTGAATCTGTAATAGATTAATATGAACATGATGTACAGTGAAATTTTACGATTATCTTAATTTTCAGCTTCAAAGCTTTCATTGACTTAAGTTCTGACAGTGTTCATAAATCTGACCAAATTTTCTTTGTTCTTTTTTGTTTTGGAAATTTGGGCATTGAGGAATCTTAATCTACATCTCTATCTTTCTAATTTTAAATGAATCTCACTACCAAATACAAATACTTGAGATCCAATTAGATAAATTGTTCGAAGATCGAGATTAGACGATTAGATATAGCATAGTATAATCCCAAATGCACTTTATGTCAATCAAATCCTTATTCGTTTTTCCTCTCGTCCTTTATAACTTTTTTTCTTTTTACTTTAAATAAGAAGAGAATTCTTTGAATCTCTACCCTTCACAGCAACTGACTATTTTTGTTCTAAATTCTTAACTTCATCTATTGTGTTTTAGACTTCAAAATATACATGGTCGGCTCTTATTGTGACAATACAAT ATGATAAAAGAAGAAAAAGTGAAGCATAAGCTGTCCTTTAATATTTCTTTCTTTTCTTTTCTTTTCTTTTTAAATCTCTTAAACCCCAAATTCATTCATTCATTCATTCTGTCTATCACAAATTCACAAATTATGAGATCCATGAAGAGAAGAAATCACTCCAAATCAAAACCCACTGCTCCACCGGCCGATCTTCTCGTCTGTTTTCCTGCACGTGCTCATCTCACTCTTCTCCCAAGTCCCGCCAGACCTCCCGCCGAACCCCATCGTCGTCACTACCGGAAAGCTCAACCAAGTCCTCTTCCATGGGCTAAGGAGATGTCGTCGGAGCCCACTTCCCCCAAGGTCACCTGCGCCGGCCAGATCAAAATCAGACCTCATTCTCATCGATCAACCAAGAATTGGCAATCGGTTATGGAAGAAATCGAGCGAATTCACAACAAAAAGAAAAATCCAATTCGAAATCAAAATCCTTTCGGTTTCAAGAGAGAAATTGTTAATTTCCTCTCGTGTTTACGGGGATTCCGTTTTGATTTCCGTTGTTTCAGAGGCTTCCCTCAATCCGACATTACAACAGATGATGAGGATGATGAAGAAGAAGTATTCGAACAACACGAACCCGAATCCGAATCCCAATCAGAATCAGAAGAAGAACCCACAAGAGGAAGAACGATGTTCTCAGAATGGTTCATGGTTTTACAGGAAGGCGAAGAAGAAACCAAACCCATAAACAACGACGCCGTTTCTTCACTCGAATTCCAACCTTCCTCTGTTTCTGTTCCTCCCCCAAATGCTCTCTTACTTATGCGTTGCAGGTCAGCCCCAAATTCTCTTTTACGAAAACCAAAACAACAAGAAGAAAAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAATCGAAAATCAGCTTGAAGTTGTTAATGGAGGAAGAGAAAGAAATGGTGACTGCGAAGAAGAAAAGCTTGATGGTAATGGATTATGATGCTGATTTTTACAAACTTTCATCAGACATTGCTAAAGAAACATGGGTTGTGAGTGGATCAAGTACCAGTAGTAGTAGTAGTAGATGTAATGACGATCCATTGTTGAGAAGTCGAAGCTGGAAGAGATGA ATGATAAAAGAAGAAAAAGTGAAGCATAAGCTGTCCTTTAATATTTCTTTCTTTTCTTTTCTTTTCTTTTTAAATCTCTTAAACCCCAAATTCATTCATTCATTCATTCTGTCTATCACAAATTCACAAATTATGAGATCCATGAAGAGAAGAAATCACTCCAAATCAAAACCCACTGCTCCACCGGCCGATCTTCTCGTCTGTTTTCCTGCACGTGCTCATCTCACTCTTCTCCCAAGTCCCGCCAGACCTCCCGCCGAACCCCATCGTCGTCACTACCGGAAAGCTCAACCAAGTCCTCTTCCATGGGCTAAGGAGATGTCGTCGGAGCCCACTTCCCCCAAGGTCACCTGCGCCGGCCAGATCAAAATCAGACCTCATTCTCATCGATCAACCAAGAATTGGCAATCGGTTATGGAAGAAATCGAGCGAATTCACAACAAAAAGAAAAATCCAATTCGAAATCAAAATCCTTTCGGTTTCAAGAGAGAAATTGTTAATTTCCTCTCGTGTTTACGGGGATTCCGTTTTGATTTCCGTTGTTTCAGAGGCTTCCCTCAATCCGACATTACAACAGATGATGAGGATGATGAAGAAGAAGTATTCGAACAACACGAACCCGAATCCGAATCCCAATCAGAATCAGAAGAAGAACCCACAAGAGGAAGAACGATGTTCTCAGAATGGTTCATGGTTTTACAGGAAGGCGAAGAAGAAACCAAACCCATAAACAACGACGCCGTTTCTTCACTCGAATTCCAACCTTCCTCTGTTTCTGTTCCTCCCCCAAATGCTCTCTTACTTATGCGTTGCAGGTCAGCCCCAAATTCTCTTTTACGAAAACCAAAACAACAAGAAGAAAAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAATCGAAAATCAGCTTGAAGTTGTTAATGGAGGAAGAGAAAGAAATGGTGACTGCGAAGAAGAAAAGCTTGATGGTAATGGATTATGATGCTGATTTTTACAAACTTTCATCAGACATTGCTAAAGAAACATGGGTTGTGAGTGGATCAAGTACCAGTAGTAGTAGTAGTAGATGTAATGACGATCCATTGTTGAGAAGTCGAAGCTGGAAGAGATGA MIKEEKVKHKLSFNISFFSFLFFLNLLNPKFIHSFILSITNSQIMRSMKRRNHSKSKPTAPPADLLVCFPARAHLTLLPSPARPPAEPHRRHYRKAQPSPLPWAKEMSSEPTSPKVTCAGQIKIRPHSHRSTKNWQSVMEEIERIHNKKKNPIRNQNPFGFKREIVNFLSCLRGFRFDFRCFRGFPQSDITTDDEDDEEEVFEQHEPESESQSESEEEPTRGRTMFSEWFMVLQEGEEETKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQEEKELEEEEEEEEEEKSKISLKLLMEEEKEMVTAKKKSLMVMDYDADFYKLSSDIAKETWVVSGSSTSSSSSRCNDDPLLRSRSWKR
BLAST of CsaV3_2G024220.1 vs. NCBI nr
Match: XP_008445342.2 (PREDICTED: uncharacterized protein LOC103488403 [Cucumis melo]) HSP 1 Score: 456.1 bits (1172), Expect = 1.2e-124 Identity = 307/325 (94.46%), Postives = 308/325 (94.77%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. NCBI nr
Match: XP_004143011.2 (PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-like [Cucumis sativus] >KGN62249.1 hypothetical protein Csa_2G345900 [Cucumis sativus]) HSP 1 Score: 445.7 bits (1145), Expect = 1.6e-121 Identity = 312/330 (94.55%), Postives = 312/330 (94.55%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. NCBI nr
Match: XP_023546364.1 (uncharacterized protein LOC111805493 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 317.4 bits (812), Expect = 6.5e-83 Identity = 248/343 (72.30%), Postives = 261/343 (76.09%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. NCBI nr
Match: XP_022962582.1 (uncharacterized protein LOC111462985 [Cucurbita moschata]) HSP 1 Score: 288.1 bits (736), Expect = 4.2e-74 Identity = 235/328 (71.65%), Postives = 244/328 (74.39%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. NCBI nr
Match: XP_022997528.1 (uncharacterized protein LOC111492421 [Cucurbita maxima]) HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64 Identity = 218/349 (62.46%), Postives = 230/349 (65.90%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. TAIR10
Match: AT1G78110.1 (unknown protein) HSP 1 Score: 146.0 bits (367), Expect = 4.7e-35 Identity = 165/339 (48.67%), Postives = 184/339 (54.28%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. TAIR10
Match: AT1G22230.1 (unknown protein) HSP 1 Score: 137.1 bits (344), Expect = 2.2e-32 Identity = 175/336 (52.08%), Postives = 195/336 (58.04%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. TrEMBL
Match: tr|A0A1S3BDB9|A0A1S3BDB9_CUCME (uncharacterized protein LOC103488403 OS=Cucumis melo OX=3656 GN=LOC103488403 PE=4 SV=1) HSP 1 Score: 456.1 bits (1172), Expect = 7.8e-125 Identity = 307/325 (94.46%), Postives = 308/325 (94.77%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. TrEMBL
Match: tr|A0A0A0LMI6|A0A0A0LMI6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345900 PE=4 SV=1) HSP 1 Score: 445.7 bits (1145), Expect = 1.1e-121 Identity = 312/330 (94.55%), Postives = 312/330 (94.55%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. TrEMBL
Match: tr|A0A2C9U1A4|A0A2C9U1A4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G068600 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 8.2e-50 Identity = 222/381 (58.27%), Postives = 247/381 (64.83%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. TrEMBL
Match: tr|F6H0W4|F6H0W4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g05370 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 5.5e-46 Identity = 186/346 (53.76%), Postives = 202/346 (58.38%), Query Frame = 0
BLAST of CsaV3_2G024220.1 vs. TrEMBL
Match: tr|A0A1U8A4G2|A0A1U8A4G2_NELNU (uncharacterized protein LOC104600126 OS=Nelumbo nucifera OX=4432 GN=LOC104600126 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 9.4e-46 Identity = 182/344 (52.91%), Postives = 206/344 (59.88%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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