CsaV3_2G019710.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAATAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAGTATTTTCTTCTTCTTCTTCTTCATCGTTTTCCATTTTGTTTTTCATGTTTAGGCTGAATATTTCCTTCACAAGATCGCCAATAAAAGGTGATATCGTTAATTACTCTAGTTTTGACTGTCATTAGTCGCTCATCTTTTTGGCATGACATGAAAGAGAGAGGATTCCGCTCAGCTGCATCAGTTTATACTGCATGCGTCCCTCGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTGAGTTCGTATTCCTTCTAGTTCTTTATTAGATCATCGAGACGCCTTCTTTATCTTTTTTTTTTTTTGTTCTTTTCCCCTTTAAATTTCGGCTTAACTCCCTTGTTGGATTTTATGCAGGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAA ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAATAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATACTGCATGCGTCCCTCGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAA ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAATAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATACTGCATGCGTCCCTCGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAA MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
BLAST of CsaV3_2G019710.1 vs. NCBI nr
Match: KGN62236.1 (hypothetical protein Csa_2G338800 [Cucumis sativus]) HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. NCBI nr
Match: XP_004147330.1 (PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus]) HSP 1 Score: 153.7 bits (387), Expect = 2.7e-34 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. NCBI nr
Match: XP_022947789.1 (transport protein particle 20 kDa subunit isoform X2 [Cucurbita moschata] >XP_022970901.1 transport protein particle 20 kDa subunit isoform X2 [Cucurbita maxima] >XP_023534751.1 transport protein particle 20 kDa subunit [Cucurbita pepo subsp. pepo]) HSP 1 Score: 152.1 bits (383), Expect = 7.8e-34 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. NCBI nr
Match: XP_022947788.1 (trafficking protein particle complex subunit 2 isoform X1 [Cucurbita moschata]) HSP 1 Score: 152.1 bits (383), Expect = 7.8e-34 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. NCBI nr
Match: XP_022970900.1 (trafficking protein particle complex subunit 2 isoform X1 [Cucurbita maxima]) HSP 1 Score: 152.1 bits (383), Expect = 7.8e-34 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. TAIR10
Match: AT1G80500.1 (SNARE-like superfamily protein) HSP 1 Score: 142.9 bits (359), Expect = 8.6e-35 Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. Swiss-Prot
Match: sp|P0DI81|TPC2A_HUMAN (Trafficking protein particle complex subunit 2 OS=Homo sapiens OX=9606 GN=TRAPPC2 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.6e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. Swiss-Prot
Match: sp|P0DI82|TPC2B_HUMAN (Trafficking protein particle complex subunit 2B OS=Homo sapiens OX=9606 GN=TRAPPC2B PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.6e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. Swiss-Prot
Match: sp|Q3T0F2|TPPC2_BOVIN (Trafficking protein particle complex subunit 2 OS=Bos taurus OX=9913 GN=TRAPPC2 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.6e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. Swiss-Prot
Match: sp|E2QV03|TPPC2_CANLF (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris OX=9615 GN=TRAPPC2 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.6e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. Swiss-Prot
Match: sp|F1SRI0|TPPC2_PIG (Trafficking protein particle complex subunit 2 OS=Sus scrofa OX=9823 GN=TRAPPC2 PE=2 SV=2) HSP 1 Score: 72.4 bits (176), Expect = 2.6e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. TrEMBL
Match: tr|A0A0A0LQF1|A0A0A0LQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338800 PE=4 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 2.1e-35 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. TrEMBL
Match: tr|A0A1S3CCU2|A0A1S3CCU2_CUCME (trafficking protein particle complex subunit 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499581 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 6.7e-34 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. TrEMBL
Match: tr|A0A067F9D4|A0A067F9D4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032720mg PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 6.7e-34 Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. TrEMBL
Match: tr|A0A2N9IH57|A0A2N9IH57_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52979 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 1.5e-33 Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0
BLAST of CsaV3_2G019710.1 vs. TrEMBL
Match: tr|A0A2H5NXF6|A0A2H5NXF6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_084620 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 2.0e-33 Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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