CsaV3_2G016270.1 (mRNA) Cucumber (Chinese Long) v3

NameCsaV3_2G016270.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 13480417 .. 13481476 (-)
Sequence length267
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAAAAACATTATAAATATTTCACCAAACAAAGTGGAATAAAATTTGCTACAAATCATATACATCCACAAAATCATGATATTAATATAATATATATATATATATATTATAACATTATACAAATAAATCTCAGTTTTAATTACACATCACTACATTGATCGATCACTCCCAAAGAAAAATAAAGGGAAAATGACATAAATATTTTGTAAAATAAAATATTGTGTTTTCTTCAAAAGAAAAAAAAAAAAAGGAAAATACATGAAAGTTTCTGTTTTTTTTTTTTTTTTCCTATCCGCCAGTCAACTACTAGAGAATGAAGCTTCATCGGAATCTCAAACACGACGAACTTCATGGACGACGGCGGCGAGCCACTCGATGCAACCAAAACCGTGCTTCTTGAGGATACGGAGAAAGGTAGGGTGGGAGGTGGTGGGTGGGGTGAGCATGGGCTGAAGGTAGGCGAGGGCGGCGTGTTTGACAAGAGGGTTCTTGATGGGGAGTTGGTCGAAGGCTGGGGAGGTGGCGGATGGGGGCGGAGAAGGGGAGTCGGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGTCGGAGAATTCTAGTTCGGGAGAGCTGAGAGGGTGATTGGGAGAGAGGAAGGAAGTTGGAGAAGGAGAAGGAGAAGGAGAAGGAGAATCTTCCATGGTGGAGATGGAGAGGAGAGAGAGATTGAAATTGGGATTTTAATGGAATTACTAAGAAAGATTTGGAGAGAAAGAGAGAGGGAGAGTCTGTGTGTGATTTGGTTTGTACAAATAATGGTGTAGGAGAGAAGGTGTGTGTGTGTGTTGTGAGGAGTGGAGAGGAATTTGATGGGAGTTTTCGAGCGTGGGAACCACGCGCTTTGTAGGAGGGTGGGACTTGATTATCAATTATAATTACTAACGTTTACAAATATAGCTGTAAAAATCAAAGTCTATAAACCATATTACAAATATGATCTACCATTCAAACATATATAACAAAAGTCTATCATTCGATTTTGCTATATTTATAATTTTTAAAA

mRNA sequence

ATGGACGACGGCGGCGAGCCACTCGATGCAACCAAAACCGTGCTTCTTGAGGATACGGAGAAAGGTAGGGTGGGAGGTGGTGGGTGGGGTGAGCATGGGCTGAAGGTAGGCGAGGGCGGCGTGTTTGACAAGAGGGTTCTTGATGGGGAGTTGGTCGAAGGCTGGGGAGGTGGCGGATGGGGGCGGAGAAGGGGAGTCGGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGTCGGAGAATTCTAG

Coding sequence (CDS)

ATGGACGACGGCGGCGAGCCACTCGATGCAACCAAAACCGTGCTTCTTGAGGATACGGAGAAAGGTAGGGTGGGAGGTGGTGGGTGGGGTGAGCATGGGCTGAAGGTAGGCGAGGGCGGCGTGTTTGACAAGAGGGTTCTTGATGGGGAGTTGGTCGAAGGCTGGGGAGGTGGCGGATGGGGGCGGAGAAGGGGAGTCGGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGTCGGAGAATTCTAG

Protein sequence

MDDGGEPLDATKTVLLEDTEKGRVGGGGWGEHGLKVGEGGVFDKRVLDGELVEGWGGGGWGRRRGVGEEVFEAGVGLKRGHFDVVGEF
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G016270CsaV3_2G016270gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G016270.1.cds1CsaV3_2G016270.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G016270.1.exon1CsaV3_2G016270.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G016270.1CsaV3_2G016270.1-proteinpolypeptide


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30