CsaV3_2G014930.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G014930.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
Location	chr2 : 12430471 .. 12431796 (+)
Sequence length	687

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTTTTAAAGATTTTCTTTTTTTTTAAAAAAAAGTAAATGGAATATTTGAATTAAAAAGAAAAGGTTTCAATTTAGTGTAACTATAAATACCAATCAAACTAAAAGTATTCAAAACAATATAACTAACATTCTCAATTGGAAAGAAAATTAAAGGAAAAAAAAAGTGAAAATTAAGATTACTTTGTTTTTTCTTGTTGATTTTTCTCTCTGTTTCCATGATTCCGATTAAGAATTTCTTTGCAGCACCCTCGTGTTTTCTTCCACCGGAGATGATCTTCACGGTTGAGTCGAAAAATTCGGAGGAGGAGTTTGTTTATCAGTAACTTTGATTTGAATTTTACGATATCAATTTTGTGGTTTTTTTCTTTCTTTTTTTCTTTCTTCGAAATGGAGTCCGTCAATTTCTACGATATAAGAACAGAGAAAGCGAACGCGATTCTTAAGTATCGACAGTTTAGGAAAATCGCTAATCTGTTTCGATTCATCGAATTGTGTTTGATTCTCATCGTGATCTCGAGATTTTCCAGTCATTTGCCGACTGCTTTGAAAAATTCTACCGAGTATTTCCGATGCTTGTCCGTGACATTAATCAGTCCTCGTTTCGTGTTTTTGATCGGAAACGCTATAGTCATCACTCTTTTCGCTAAGTCTGGACAGTTCTCTGCCAAGGATCCGAGCAAGAAGAGTTTAGTTGCGGATCTTTACGAGGAGTTCATAAAAAACAGCGAGAAGAATAATCAGAAATCTCCACGCACTGAAATCAAGCATATCGACGAAAGCCGCAGAAAAGCTTCGATATCTGTCGAGAAGATCGTGAATAATCCTAAGGAAACAAGGCGATATGAGAGGAGTAAATCGGAGAGAATGGAGGTTGTACCGCGGGAGAAGGTGGATCGTGAAATGCAGCGATCGGAGACGGAGAAATGCAAGAAAATGGTGGAATTGAAGGAAGGAAGAAGAAATAGGTCGTATCTGGAAGATGGAATGAGCAACGAAGAGTTCCGGCAGACGGTGGAGGCGTTCATAGCGCGGCAGCAGAGGTTGCAAAGGGAGGAAGAGTTGAGTGAATTTTAGGAAAACTATGTAAATCAAAAAGCTCTAAGTTGTGGTAAATCCGCCAAGAAAATTAGGGCTACGGGTTGAAGAAGATGAAAAAAGTTGTAACAACTTTTAATGTATGTAATGTATACAGTTTTATTTTCAAAAACATATATTTGGATGAAAGTTATATAAAAACACATTCAAACCACTTTTTATTTTTTAGTTAGACTTCAATTCAATTAACCCTATCAACTTTTTTAATATTATGGTCCGCCTCAACA

mRNA sequence

ATGGAGTCCGTCAATTTCTACGATATAAGAACAGAGAAAGCGAACGCGATTCTTAAGTATCGACAGTTTAGGAAAATCGCTAATCTGTTTCGATTCATCGAATTGTGTTTGATTCTCATCGTGATCTCGAGATTTTCCAGTCATTTGCCGACTGCTTTGAAAAATTCTACCGAGTATTTCCGATGCTTGTCCGTGACATTAATCAGTCCTCGTTTCGTGTTTTTGATCGGAAACGCTATAGTCATCACTCTTTTCGCTAAGTCTGGACAGTTCTCTGCCAAGGATCCGAGCAAGAAGAGTTTAGTTGCGGATCTTTACGAGGAGTTCATAAAAAACAGCGAGAAGAATAATCAGAAATCTCCACGCACTGAAATCAAGCATATCGACGAAAGCCGCAGAAAAGCTTCGATATCTGTCGAGAAGATCGTGAATAATCCTAAGGAAACAAGGCGATATGAGAGGAGTAAATCGGAGAGAATGGAGGTTGTACCGCGGGAGAAGGTGGATCGTGAAATGCAGCGATCGGAGACGGAGAAATGCAAGAAAATGGTGGAATTGAAGGAAGGAAGAAGAAATAGGTCGTATCTGGAAGATGGAATGAGCAACGAAGAGTTCCGGCAGACGGTGGAGGCGTTCATAGCGCGGCAGCAGAGGTTGCAAAGGGAGGAAGAGTTGAGTGAATTTTAG

Coding sequence (CDS)

ATGGAGTCCGTCAATTTCTACGATATAAGAACAGAGAAAGCGAACGCGATTCTTAAGTATCGACAGTTTAGGAAAATCGCTAATCTGTTTCGATTCATCGAATTGTGTTTGATTCTCATCGTGATCTCGAGATTTTCCAGTCATTTGCCGACTGCTTTGAAAAATTCTACCGAGTATTTCCGATGCTTGTCCGTGACATTAATCAGTCCTCGTTTCGTGTTTTTGATCGGAAACGCTATAGTCATCACTCTTTTCGCTAAGTCTGGACAGTTCTCTGCCAAGGATCCGAGCAAGAAGAGTTTAGTTGCGGATCTTTACGAGGAGTTCATAAAAAACAGCGAGAAGAATAATCAGAAATCTCCACGCACTGAAATCAAGCATATCGACGAAAGCCGCAGAAAAGCTTCGATATCTGTCGAGAAGATCGTGAATAATCCTAAGGAAACAAGGCGATATGAGAGGAGTAAATCGGAGAGAATGGAGGTTGTACCGCGGGAGAAGGTGGATCGTGAAATGCAGCGATCGGAGACGGAGAAATGCAAGAAAATGGTGGAATTGAAGGAAGGAAGAAGAAATAGGTCGTATCTGGAAGATGGAATGAGCAACGAAGAGTTCCGGCAGACGGTGGAGGCGTTCATAGCGCGGCAGCAGAGGTTGCAAAGGGAGGAAGAGTTGAGTGAATTTTAG

Protein sequence

MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYFRCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKSPRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF

Homology

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BLAST of CsaV3_2G014930.1 vs. NCBI nr
Match: XP_011649236.1 (PREDICTED: uncharacterized protein LOC105434603 [Cucumis sativus] >KGN61815.1 hypothetical protein Csa_2G248720 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 1.2e-114
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF
Sbjct: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS
Sbjct: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120

Query: 121 PRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKC 180
           PRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKC
Sbjct: 121 PRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKC 180

Query: 181 KKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 229
           KKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF
Sbjct: 181 KKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 228

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BLAST of CsaV3_2G014930.1 vs. NCBI nr
Match: XP_008460958.1 (PREDICTED: uncharacterized protein LOC103499689 [Cucumis melo])

HSP 1 Score: 378.6 bits (971), Expect = 1.5e-101
Identity = 211/233 (90.56%), Postives = 219/233 (93.99%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKN TEYF
Sbjct: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNFTEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           R LSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKK+LVADLYEEFIKNSEKNNQKS
Sbjct: 61  RYLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKNLVADLYEEFIKNSEKNNQKS 120

Query: 121 PRTE----IKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDRE-MQRS 180
           PRTE    IKHIDESR KAS+SVEK+VNNP+ET+RY+R KSE+MEVV REKVDRE +QRS
Sbjct: 121 PRTEINYQIKHIDESRGKASVSVEKVVNNPEETKRYQRCKSEKMEVVLREKVDRELLQRS 180

Query: 181 ETEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 229
           ETEKCKKMVELKEGRRN SY ED MSNEEFRQTVEAFIARQQRLQREEE SEF
Sbjct: 181 ETEKCKKMVELKEGRRNSSYPEDVMSNEEFRQTVEAFIARQQRLQREEEFSEF 233

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BLAST of CsaV3_2G014930.1 vs. NCBI nr
Match: XP_022146107.1 (uncharacterized protein LOC111015401 [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 5.2e-75
Identity = 167/228 (73.25%), Postives = 190/228 (83.33%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           MESVNFYDIR EKANAILK+RQ RKIANLFRFIELCL+L++ISRFSSHLP+A+KNS EYF
Sbjct: 1   MESVNFYDIRAEKANAILKHRQLRKIANLFRFIELCLVLVLISRFSSHLPSAVKNSGEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKK+ VADLYE+FIKNSEK NQK+
Sbjct: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKNSVADLYEDFIKNSEK-NQKT 120

Query: 121 PRTEI----KHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSE 180
              EI    K ID     AS++ +K+V NP+E + Y RS+SE++ V  +E   RE++RSE
Sbjct: 121 RHAEIEYRTKQID-GDGDASVAAKKVV-NPEEIKLYRRSQSEKIAVAQQENPQRELRRSE 180

Query: 181 TEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEE 225
           TEKCKK+V   EG    SY ED MSNEEFRQTVEAFIARQQRL+REEE
Sbjct: 181 TEKCKKLVRFSEGAAKSSYPEDRMSNEEFRQTVEAFIARQQRLRREEE 225

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BLAST of CsaV3_2G014930.1 vs. NCBI nr
Match: XP_022986604.1 (uncharacterized protein LOC111484294 isoform X1 [Cucurbita maxima])

HSP 1 Score: 282.0 bits (720), Expect = 1.9e-72
Identity = 168/238 (70.59%), Postives = 191/238 (80.25%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           MESVNFYD+R  K NAILKYRQ RKIANLFRFIELCLIL+V++RFSS+LP+A KNS EYF
Sbjct: 1   MESVNFYDVRAAKMNAILKYRQVRKIANLFRFIELCLILVVMTRFSSNLPSAFKNSGEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKK+ VADLYEEF++NSEK NQK+
Sbjct: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKNSVADLYEEFVQNSEK-NQKT 120

Query: 121 PRTEI----KHIDESR------RKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDR 180
            R EI    K ID+SR         SI+++KI     E + Y+RS+SE++ VV RE   R
Sbjct: 121 RRAEIEYRVKQIDDSRGNXXXXXDTSIAIKKI----GEIKHYQRSESEKIGVVQRENPHR 180

Query: 181 EMQRSETEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 229
           E++RSETEK KK+V L E  RNRS  ED MSNEEFRQTVEAFIARQQRL+REEE   F
Sbjct: 181 ELRRSETEKYKKIVRLSEETRNRSSPEDRMSNEEFRQTVEAFIARQQRLRREEEFCVF 233

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BLAST of CsaV3_2G014930.1 vs. NCBI nr
Match: XP_022948013.1 (uncharacterized protein LOC111451717 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 4.9e-65
Identity = 154/249 (61.85%), Postives = 178/249 (71.49%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           MESV F DIRTEK NAILKYRQ RKIANLFRFIELCLIL+VIS+ S HLP+A KNS EYF
Sbjct: 1   MESVGFCDIRTEKMNAILKYRQLRKIANLFRFIELCLILVVISKLSIHLPSAFKNSGEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           RCLS+TLISPRFVFLIGNAIVITLFAKSGQFS  D SKK+ VADLYEEFI+NSEK NQ++
Sbjct: 61  RCLSMTLISPRFVFLIGNAIVITLFAKSGQFSGTDLSKKNSVADLYEEFIQNSEK-NQRT 120

Query: 121 PRTEIKHIDESRRKASI---------------------SVEKIVNNPKETRRYERSKSER 180
            R EIK+  +     ++                          + NP+E + Y RS+SE+
Sbjct: 121 RRAEIKYRIKQTDSGNVHGXXXXXXXXXXXXXXXXXXXXXXXKIGNPEEIKHYRRSQSEK 180

Query: 181 MEVVPREKVDREMQRSETEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRL 229
           + VV RE    ++ RSETEK KK+V L EG    SY EDGMSNEEF++ VEAFIARQQRL
Sbjct: 181 IAVVQRENPHSKLSRSETEKSKKIVRLSEGTEQISYPEDGMSNEEFQEMVEAFIARQQRL 240

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BLAST of CsaV3_2G014930.1 vs. TAIR10
Match: AT4G34560.1 (unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 8.7e-24
Identity = 84/230 (36.52%), Postives = 137/230 (59.57%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           M+ + F  ++ EK+  IL ++  R   +LFR  EL L++I+IS+ S     ++K S + F
Sbjct: 1   MDPIKFQHLKMEKSRGILNFQAIRSFTSLFRLFELLLLVILISKLSF---PSVKISGDIF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAK-DPSKKSLVA---DLYEEFIKNSEKN 120
           +  +V L+SPRFVF IGNAIVITL AKSG++S+  +PSK +  A   DLY+EF+  SEK 
Sbjct: 61  KEAAVFLVSPRFVFFIGNAIVITLLAKSGRYSSSHEPSKTATEAASNDLYQEFLHKSEKK 120

Query: 121 NQKSPRTEIKHIDESRRKASISVEKIVNNP--KETRRYERSKSERMEVVPREKVDREMQR 180
                 T+ + + +      +S  +  ++   +  +  E +  E+   + R   ++ M+ 
Sbjct: 121 KPVVYATKTEQLKKPSGGKRVSFGRSQSHKAFEAVKPLESTNGEKN--MKRYVSEKHMRV 180

Query: 181 SETEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEE 225
            +++K K +V +K+        EDGMSNE+FR  +EAFIARQ+R+Q++EE
Sbjct: 181 CDSDK-KVVVRVKKP-------EDGMSNEQFRTKIEAFIARQKRIQKDEE 217

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BLAST of CsaV3_2G014930.1 vs. TAIR10
Match: AT5G66440.1 (unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 69/247 (27.94%), Postives = 125/247 (50.61%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           M+S +F +++ EKA A+ ++ +F +I   FR  E+C+ L+ I    S LP  ++ S  + 
Sbjct: 1   MDSFDFDNVKAEKAKALRRFNRFCRIGRFFRAAEVCVALLFIFWTFSQLPFVVQISGAFL 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           R ++  + +P FVFL+GN+I                +  S   ++Y+ F+++ E  ++ S
Sbjct: 61  RRIAAVISTPLFVFLLGNSIXXXXXXXXXXXXXXXVA--SAETEIYQAFVRSVENRSKPS 120

Query: 121 PRTEIKHIDESRRKASIS----------------VEKIVNNPKETRRYERSKSE----RM 180
                + I    ++  ++                VE   ++   ++ Y RSKS+    + 
Sbjct: 121 DEDLTEGIVYDDKQVIVTDLDSNPNLTVDENMPHVEIDSDSSPHSKVYGRSKSDVSGKQS 180

Query: 181 EVVPREKVDREMQRSETEK-CKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRL 227
             +    + R +QRSETEK CK+           +Y ED +SNEEF++T+EAFIA+Q+  
Sbjct: 181 SNMVMMMMKRSLQRSETEKFCKETEXXXXXXXXXNYPEDDLSNEEFQKTIEAFIAKQRMF 240

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BLAST of CsaV3_2G014930.1 vs. TAIR10
Match: AT4G39190.1 (unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.7e-06
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 30  FRFIELCLILIVISRFSSHLPTALKNSTEYFRCLSVTLISPRFVFLIGNAIVITLFAKSG 89
           FR IE+ ++L+ +++ S  L    ++S+      SV L +    F+IGNAIVI L AKSG
Sbjct: 32  FRAIEIVVVLVTLAKLSYELVVTFEDSS----VASVILANRSLAFVIGNAIVIALIAKSG 91

Query: 90  QFSAKDPSKKSLVADLYEEFIKNSEK 116
               ++   K    DLYE+F+  S +
Sbjct: 92  ILLNQEHDPKCKSNDLYEDFVLESSR 113

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BLAST of CsaV3_2G014930.1 vs. TrEMBL
Match: tr|A0A0A0LIS8|A0A0A0LIS8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G248720 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.6e-115
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF
Sbjct: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS
Sbjct: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120

Query: 121 PRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKC 180
           PRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKC
Sbjct: 121 PRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKC 180

Query: 181 KKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 229
           KKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF
Sbjct: 181 KKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 228

[Close]

BLAST of CsaV3_2G014930.1 vs. TrEMBL
Match: tr|A0A1S3CDN2|A0A1S3CDN2_CUCME (uncharacterized protein LOC103499689 OS=Cucumis melo OX=3656 GN=LOC103499689 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 9.7e-102
Identity = 211/233 (90.56%), Postives = 219/233 (93.99%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKN TEYF
Sbjct: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNFTEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           R LSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKK+LVADLYEEFIKNSEKNNQKS
Sbjct: 61  RYLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKNLVADLYEEFIKNSEKNNQKS 120

Query: 121 PRTE----IKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDRE-MQRS 180
           PRTE    IKHIDESR KAS+SVEK+VNNP+ET+RY+R KSE+MEVV REKVDRE +QRS
Sbjct: 121 PRTEINYQIKHIDESRGKASVSVEKVVNNPEETKRYQRCKSEKMEVVLREKVDRELLQRS 180

Query: 181 ETEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 229
           ETEKCKKMVELKEGRRN SY ED MSNEEFRQTVEAFIARQQRLQREEE SEF
Sbjct: 181 ETEKCKKMVELKEGRRNSSYPEDVMSNEEFRQTVEAFIARQQRLQREEEFSEF 233

[Close]

BLAST of CsaV3_2G014930.1 vs. TrEMBL
Match: tr|B9RH74|B9RH74_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1447810 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 121/230 (52.61%), Postives = 165/230 (71.74%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           M+S N  +I+ +KANAI K+RQ +KIANLFRFIE+CL+L +ISRFS  LP A+KNS+EYF
Sbjct: 1   MDSFNICNIKLQKANAIKKHRQLQKIANLFRFIEICLVLALISRFSIGLPVAVKNSSEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           + L+V L SPRF+F++GNAIVITLFAKSGQFSA+D + K    D YEEF++ SE++    
Sbjct: 61  KDLTVILASPRFIFIVGNAIVITLFAKSGQFSAQDSTGKKSTNDFYEEFVRKSERS---- 120

Query: 121 PRTEIKHIDESRRKASISVEKIVNNPK----ETRRYERSKSERMEVVPREKVDREMQRSE 180
            R   ++  E R+K S  V++ V        E ++Y+RS+S+++E   R    +E++R  
Sbjct: 121 -RGMHRYEVECRQKQSTCVQEKVTEEAVASLEIKKYQRSQSQKLEQANRSNSCKELRRVA 180

Query: 181 TEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELS 227
           TEKC++ V+  EG    SY ED MSNEEFR TVEAFIARQ+R++R+EE S
Sbjct: 181 TEKCRRSVDNSEGWMKISYPEDSMSNEEFRCTVEAFIARQKRIRRDEENS 225

[Close]

BLAST of CsaV3_2G014930.1 vs. TrEMBL
Match: tr|A0A2C9W0G0|A0A2C9W0G0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G073500 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.5e-49
Identity = 126/230 (54.78%), Postives = 163/230 (70.87%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           M S N  +I+ EK NA+ K+RQ +K ANLFRFIE+CLIL +ISRFS  LP A+KNSTEYF
Sbjct: 1   MGSFNIINIKVEKENAMKKHRQLQKFANLFRFIEICLILALISRFSVGLPVAVKNSTEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           + ++V L+SPRFVF++GNAIVITLFAKSGQFS +DPS+K+   DLYEEF++ SE+ NQ  
Sbjct: 61  KDITVILLSPRFVFILGNAIVITLFAKSGQFSGQDPSEKNSRTDLYEEFVEKSER-NQIM 120

Query: 121 PRTEIKHIDESRRKASISVEKIVNNPK----ETRRYERSKSERMEVVPREKVDREMQRSE 180
            R E      +R K S  VE IV        E++ Y+RS+SE+++ V   K   +++RS 
Sbjct: 121 QRYEA----GNRGKQSSCVECIVTEATCTSVESKNYQRSRSEKLDRVTINKPCIQLRRSA 180

Query: 181 TEKCKKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELS 227
           TEKC+   +  EG    SY ED MSNEEFR TVEAFIARQ+R +++EE S
Sbjct: 181 TEKCRGSADSGEGWVKVSYPEDNMSNEEFRCTVEAFIARQKRFRKDEENS 225

[Close]

BLAST of CsaV3_2G014930.1 vs. TrEMBL
Match: tr|A0A2C9V0T5|A0A2C9V0T5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G085200 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.1e-48
Identity = 119/228 (52.19%), Postives = 161/228 (70.61%), Query Frame = 0


Query: 1   MESVNFYDIRTEKANAILKYRQFRKIANLFRFIELCLILIVISRFSSHLPTALKNSTEYF 60
           M+S +  +I+ EKANA+ K+RQ +KIAN FRF+E+ ++L +ISRFS  LP A+KNS+EYF
Sbjct: 1   MDSFSISNIKLEKANAMKKHRQLQKIANFFRFLEIFIVLALISRFSVQLPVAVKNSSEYF 60

Query: 61  RCLSVTLISPRFVFLIGNAIVITLFAKSGQFSAKDPSKKSLVADLYEEFIKNSEKNNQKS 120
           + L+V L+SPRFVF+IGNAIVITLFAKSGQFS +DPS K+   DLY+EF++ SE+  Q  
Sbjct: 61  KDLTVILVSPRFVFIIGNAIVITLFAKSGQFSGQDPSGKNSRTDLYDEFVEKSER-IQSL 120

Query: 121 PRTEIKHIDESRRKASISVEKIVNNPKETRRYERSKSERMEVVPREKVDREMQRSETEKC 180
              E  + D         V +  +   E + Y+RS+SE+++   R K+ RE++RS TEKC
Sbjct: 121 HGYEAGNSDRQSSSVEYIVTEETSPSAEIKNYQRSESEKLDRGTRNKLCRELRRSATEKC 180

Query: 181 KKMVELKEGRRNRSYLEDGMSNEEFRQTVEAFIARQQRLQREEELSEF 229
           ++ V   EG    SY ED MSNEEFR TVEAFIARQ+R +R+EE S +
Sbjct: 181 RESVGSGEGWMKISYPEDRMSNEEFRCTVEAFIARQKRFRRDEENSVY 227

The following BLAST results are available for this feature:

BLAST of CsaV3_2G014930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649236.1	1.2e-114	100.00	PREDICTED: uncharacterized protein LOC105434603 [Cucumis sativus] >KGN61815.1 hy...	[more]
XP_008460958.1	1.5e-101	90.56	PREDICTED: uncharacterized protein LOC103499689 [Cucumis melo]	[more]
XP_022146107.1	5.2e-75	73.25	uncharacterized protein LOC111015401 [Momordica charantia]	[more]
XP_022986604.1	1.9e-72	70.59	uncharacterized protein LOC111484294 isoform X1 [Cucurbita maxima]	[more]
XP_022948013.1	4.9e-65	61.85	uncharacterized protein LOC111451717 [Cucurbita moschata]	[more]

BLAST of CsaV3_2G014930.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34560.1	8.7e-24	36.52	unknown protein	[more]
AT5G66440.1	1.5e-15	27.94	unknown protein	[more]
AT4G39190.1	3.7e-06	36.05	unknown protein	[more]

BLAST of CsaV3_2G014930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G014930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIS8\|A0A0A0LIS8_CUCSA	7.6e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G248720 PE=4 SV=1	[more]
tr\|A0A1S3CDN2\|A0A1S3CDN2_CUCME	9.7e-102	90.56	uncharacterized protein LOC103499689 OS=Cucumis melo OX=3656 GN=LOC103499689 PE=...	[more]
tr\|B9RH74\|B9RH74_RICCO	1.9e-49	52.61	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1447810 PE=4 SV=1	[more]
tr\|A0A2C9W0G0\|A0A2C9W0G0_MANES	9.5e-49	54.78	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G073500 PE=4 SV=...	[more]
tr\|A0A2C9V0T5\|A0A2C9V0T5_MANES	8.1e-48	52.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G085200 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025520	DUF4408

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G014930	CsaV3_2G014930	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G014930.1.exon1	CsaV3_2G014930.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G014930.1.cds1	CsaV3_2G014930.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G014930.1	CsaV3_2G014930.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 202..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..177
None	No IPR available	PANTHER	PTHR33640	FAMILY NOT NAMED	coord: 1..226
None	No IPR available	PANTHER	PTHR33640:SF3	SUBFAMILY NOT NAMED	coord: 1..226
IPR025520	Domain of unknown function DUF4408	PFAM	PF14364	DUF4408	coord: 64..88 e-value: 3.8E-6 score: 26.4