CsaV3_2G010170.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G010170.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 6940497 .. 6941367 (+)
Sequence length462
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTACTTGGAAGATAAGGGGGTGAGTGGAGGTTGTGAGGAACTTGAGCAGCTTGTCCTAGGAGGCCTTTCTTATTACGTAGGGATTGAGGCCGTGGGCATGCAACAAGATTTCATTGGAGTCCTCAGTCTTAAATGATCGTCTTCTCTCTGATCTTATGGCTTCCTCCTCTTCTTGTTTGTACCCTCATCACCCTTTTTATTTATCACTATATGGATGGTGATGAGGTCCCAACTTTCCATTTTGCCCCTCTTGTACTTATGTCCACAAGGCATCCTTACAAATGCTAGGATCTCTTCTTTCTTGGTGGGTCGACAGTTTCTCCTTCGACATGGTGTTTCTCTTTTCTTCTTTCTCAAACTCCTCGGCCACGCCCTCGACCACCTTTGTCTCCCACTCTCTTCCCTTGGTTCTTCTTCCAAGGACCCGAATTCCTTTCGTGGATCTTGCAGGGATCCTTGTTGTTAACCCTGTAAAATCAACATTAGGCGAGGAGGTGCTTTTTATTTGAAGCTCAAGATCCTCCTTCCTTACCTGGTTGTTTCGCTTCTTCCTTTTTCCTATCTTCTTATTCTTGTTACATAATCTTTTATTCTTGTATATCTTTTCACTTTCTTTTGCCCCTTCTTTCCATAATCTTTTATTCCTGAATTTCCTTCATCGATCTTTTCGTTCTTTCGCGCTTTCTATGTTTTTGGAACCTTATCACTCTAGGCACCGAAAAGGAGGAGTGGTTGTTACTCATGATGGGGTTGCTAGATGAGAAATTTTGTAAAGGAGACTATTTCTTGGTGAAAGATGGCAGGAATACGATGAAGAACATGGAAGAAGAGCTTTTTGGAATGGTAGTATTTTGGAGATTAATTGA

mRNA sequence

ATGGATTACTTGGAAGATAAGGGGGTGAGTGGAGGTTGTGAGGAACTTGAGCAGCTTGTCCTAGGAGGCCTTTCTTATTACGTAGGGATTGAGGCCGTGGGCATGCAACAAGATTTCATTGGAGTCCTCAGTCCCAACTTTCCATTTTGCCCCTCTTGTACTTATGTCCACAAGGCATCCTTACAAATGCTAGGATCTCTTCTTTCTTGGTGGGTCGACAGTTTCTCCTTCGACATGGTGTTTCTCTTTTCTTCTTTCTCAAACTCCTCGGCCACGCCCTCGACCACCTTTGTCTCCCACTCTCTTCCCTTGGTTCTTCTTCCAAGGACCCGAATTCCTTTCGTGGATCTTGCAGGGATCCTTGTTGTTAACCCTGTAAAATCAACATTAGGCGAGGAGGAATACGATGAAGAACATGGAAGAAGAGCTTTTTGGAATGGTAGTATTTTGGAGATTAATTGA

Coding sequence (CDS)

ATGGATTACTTGGAAGATAAGGGGGTGAGTGGAGGTTGTGAGGAACTTGAGCAGCTTGTCCTAGGAGGCCTTTCTTATTACGTAGGGATTGAGGCCGTGGGCATGCAACAAGATTTCATTGGAGTCCTCAGTCCCAACTTTCCATTTTGCCCCTCTTGTACTTATGTCCACAAGGCATCCTTACAAATGCTAGGATCTCTTCTTTCTTGGTGGGTCGACAGTTTCTCCTTCGACATGGTGTTTCTCTTTTCTTCTTTCTCAAACTCCTCGGCCACGCCCTCGACCACCTTTGTCTCCCACTCTCTTCCCTTGGTTCTTCTTCCAAGGACCCGAATTCCTTTCGTGGATCTTGCAGGGATCCTTGTTGTTAACCCTGTAAAATCAACATTAGGCGAGGAGGAATACGATGAAGAACATGGAAGAAGAGCTTTTTGGAATGGTAGTATTTTGGAGATTAATTGA

Protein sequence

MDYLEDKGVSGGCEELEQLVLGGLSYYVGIEAVGMQQDFIGVLSPNFPFCPSCTYVHKASLQMLGSLLSWWVDSFSFDMVFLFSSFSNSSATPSTTFVSHSLPLVLLPRTRIPFVDLAGILVVNPVKSTLGEEEYDEEHGRRAFWNGSILEIN
Homology
[Close]
BLAST of CsaV3_2G010170.1 vs. NCBI nr
Match: KGN61321.1 (hypothetical protein Csa_2G081200 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 3.0e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MDYLEDKGVSGGCEELEQLVLGGLSYYVGIEAVGMQQDFIGVLSPNFPFCPSCTYVHKAS 60
           MDYLEDKGVSGGCEELEQLVLGGLSYYVGIEAVGMQQDFIGVLSPNFPFCPSCTYVHKAS
Sbjct: 1   MDYLEDKGVSGGCEELEQLVLGGLSYYVGIEAVGMQQDFIGVLSPNFPFCPSCTYVHKAS 60

Query: 61  LQMLGSLLSWWVDSFSFDMVFLFSSFSNSSATPSTTFVSHSLPLVLLPRTRIPFVDLAGI 120
           LQMLGSLLSWWVDSFSFDMVFLFSSFSNSSATPSTTFVSHSLPLVLLPRTRIPFVDLAGI
Sbjct: 61  LQMLGSLLSWWVDSFSFDMVFLFSSFSNSSATPSTTFVSHSLPLVLLPRTRIPFVDLAGI 120

Query: 121 LVVNPVKSTLGEEEYDEEHGRRAFWNGSILEIN 154
           LVVNPVKSTLGEEEYDEEHGRRAFWNGSILEIN
Sbjct: 121 LVVNPVKSTLGEEEYDEEHGRRAFWNGSILEIN 153

[Close]
BLAST of CsaV3_2G010170.1 vs. TrEMBL
Match: tr|A0A0A0LMW9|A0A0A0LMW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G081200 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.0e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MDYLEDKGVSGGCEELEQLVLGGLSYYVGIEAVGMQQDFIGVLSPNFPFCPSCTYVHKAS 60
           MDYLEDKGVSGGCEELEQLVLGGLSYYVGIEAVGMQQDFIGVLSPNFPFCPSCTYVHKAS
Sbjct: 1   MDYLEDKGVSGGCEELEQLVLGGLSYYVGIEAVGMQQDFIGVLSPNFPFCPSCTYVHKAS 60

Query: 61  LQMLGSLLSWWVDSFSFDMVFLFSSFSNSSATPSTTFVSHSLPLVLLPRTRIPFVDLAGI 120
           LQMLGSLLSWWVDSFSFDMVFLFSSFSNSSATPSTTFVSHSLPLVLLPRTRIPFVDLAGI
Sbjct: 61  LQMLGSLLSWWVDSFSFDMVFLFSSFSNSSATPSTTFVSHSLPLVLLPRTRIPFVDLAGI 120

Query: 121 LVVNPVKSTLGEEEYDEEHGRRAFWNGSILEIN 154
           LVVNPVKSTLGEEEYDEEHGRRAFWNGSILEIN
Sbjct: 121 LVVNPVKSTLGEEEYDEEHGRRAFWNGSILEIN 153

The following BLAST results are available for this feature:
BLAST of CsaV3_2G010170.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61321.13.0e-82100.00hypothetical protein Csa_2G081200 [Cucumis sativus][more]
BLAST of CsaV3_2G010170.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G010170.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G010170.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMW9|A0A0A0LMW9_CUCSA2.0e-82100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G081200 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G010170CsaV3_2G010170gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G010170.1CsaV3_2G010170.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G010170.1.exon1CsaV3_2G010170.1.exon1exon
CsaV3_2G010170.1.exon2CsaV3_2G010170.1.exon2exon
CsaV3_2G010170.1.exon3CsaV3_2G010170.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G010170.1.cds1CsaV3_2G010170.1.cds1CDS
CsaV3_2G010170.1.cds2CsaV3_2G010170.1.cds2CDS
CsaV3_2G010170.1.cds3CsaV3_2G010170.1.cds3CDS