CsaV3_2G009600.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009600.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 6091188 .. 6091574 (-)
Sequence length339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTTTGCACAGTCAAAACTTCTTCGAAATACTCAAATGTGGGCTTATAAATAGTTGTGCCAATGAAGTCATAAATATCATTGCCATTGCTCTACGTCGTGGGTTCTTGAGGTTCAACGAGACGTGGCCCAAGGGTGCTTGTCTTGTCAGCTACTCCAAGACGTGTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTAATTACGGCTTGTCACAGTGGTCGCTTCTAAATGCATTCTATAACCTTTTGATATCACAACTATTGGAACGTCTTTCTTCGTGCCCTGCCTCAGAAGAAGAATCACATCATTATTAG

mRNA sequence

ATGGCACTTTTGCACAGTCAAAACTTCTTCGAAATACTCAAATGTGGGCTTATAAATAGTTGTGCCAATGAAGTCATAAATATCATTGCCATTGCTCTACGTCGTGGGTTCTTGAGGTTCAACGAGACGTGGCCCAAGGGTGCTTGTCTTGTCAGCTACTCCAAGACGTGTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTAATTACGGCTTGTCACAGTGGTCGCTTCTAAATGCATTCTATAACCTTTTGATATCACAACTATTGGAACGTCTTTCTTCGTGCCCTGCCTCAGAAGAAGAATCACATCATTATTAG

Coding sequence (CDS)

ATGGCACTTTTGCACAGTCAAAACTTCTTCGAAATACTCAAATGTGGGCTTATAAATAGTTGTGCCAATGAAGTCATAAATATCATTGCCATTGCTCTACGTCGTGGGTTCTTGAGGTTCAACGAGACGTGGCCCAAGGGTGCTTGTCTTGTCAGCTACTCCAAGACGTGTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTAATTACGGCTTGTCACAGTGGTCGCTTCTAAATGCATTCTATAACCTTTTGATATCACAACTATTGGAACGTCTTTCTTCGTGCCCTGCCTCAGAAGAAGAATCACATCATTATTAG

Protein sequence

MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFPLESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY
Homology
[Close]
BLAST of CsaV3_2G009600.1 vs. NCBI nr
Match: KGN61254.1 (hypothetical protein Csa_2G074160 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60
           MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP
Sbjct: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60

Query: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 113
           LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY
Sbjct: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 112

[Close]
BLAST of CsaV3_2G009600.1 vs. TrEMBL
Match: tr|A0A0A0LJI5|A0A0A0LJI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074160 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60
           MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP
Sbjct: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60

Query: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 113
           LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY
Sbjct: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 112

The following BLAST results are available for this feature:
BLAST of CsaV3_2G009600.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61254.11.9e-57100.00hypothetical protein Csa_2G074160 [Cucumis sativus][more]
BLAST of CsaV3_2G009600.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009600.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009600.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJI5|A0A0A0LJI5_CUCSA1.2e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G009600CsaV3_2G009600gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G009600.1.cds2CsaV3_2G009600.1.cds2CDS
CsaV3_2G009600.1.cds1CsaV3_2G009600.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G009600.1.exon2CsaV3_2G009600.1.exon2exon
CsaV3_2G009600.1.exon1CsaV3_2G009600.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G009600.1CsaV3_2G009600.1-proteinpolypeptide