CsaV3_2G009600 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 6091188 .. 6091574 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTTTGCACAGTCAAAACTTCTTCGAAATACTCAAATGTGGGCTTATAAATAGTTGTGCCAATGAAGTCATAAATATCATTGCCATTGCTCTACGTCGTGGGTTCTTGAGGTTCAACGAGACGTGGCCCAAGGGTGCTTGTCTTGTCAGCTACTCCAAGACGTGTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTAATTACGGCTTGTCACAGTGGTCGCTTCTAAATGCATTCTATAACCTTTTGATATCACAACTATTGGAACGTCTTTCTTCGTGCCCTGCCTCAGAAGAAGAATCACATCATTATTAG

mRNA sequence

ATGGCACTTTTGCACAGTCAAAACTTCTTCGAAATACTCAAATGTGGGCTTATAAATAGTTGTGCCAATGAAGTCATAAATATCATTGCCATTGCTCTACGTCGTGGGTTCTTGAGGTTCAACGAGACGTGGCCCAAGGGTGCTTGTCTTGTCAGCTACTCCAAGACGTGTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTAATTACGGCTTGTCACAGTGGTCGCTTCTAAATGCATTCTATAACCTTTTGATATCACAACTATTGGAACGTCTTTCTTCGTGCCCTGCCTCAGAAGAAGAATCACATCATTATTAG

Coding sequence (CDS)

ATGGCACTTTTGCACAGTCAAAACTTCTTCGAAATACTCAAATGTGGGCTTATAAATAGTTGTGCCAATGAAGTCATAAATATCATTGCCATTGCTCTACGTCGTGGGTTCTTGAGGTTCAACGAGACGTGGCCCAAGGGTGCTTGTCTTGTCAGCTACTCCAAGACGTGTTGTTTTCCTTTGGAGAGTGGGTCATCAACATTAACTCTCATCTCAATTTGTAATTACGGCTTGTCACAGTGGTCGCTTCTAAATGCATTCTATAACCTTTTGATATCACAACTATTGGAACGTCTTTCTTCGTGCCCTGCCTCAGAAGAAGAATCACATCATTATTAG

Protein sequence

MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFPLESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY
Homology
[Close]
BLAST of CsaV3_2G009600 vs. NCBI nr
Match: KGN61254.1 (hypothetical protein Csa_2G074160 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60
           MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP
Sbjct: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60

Query: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 113
           LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY
Sbjct: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 112

[Close]
BLAST of CsaV3_2G009600 vs. TrEMBL
Match: tr|A0A0A0LJI5|A0A0A0LJI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074160 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60
           MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP
Sbjct: 1   MALLHSQNFFEILKCGLINSCANEVINIIAIALRRGFLRFNETWPKGACLVSYSKTCCFP 60

Query: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 113
           LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY
Sbjct: 61  LESGSSTLTLISICNYGLSQWSLLNAFYNLLISQLLERLSSCPASEEESHHY 112

The following BLAST results are available for this feature:
BLAST of CsaV3_2G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61254.11.9e-57100.00hypothetical protein Csa_2G074160 [Cucumis sativus][more]
BLAST of CsaV3_2G009600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJI5|A0A0A0LJI5_CUCSA1.2e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009600.1CsaV3_2G009600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G009600Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G009600Cucurbita pepo (Zucchini)cpecucB0108
CsaV3_2G009600Cucurbita pepo (Zucchini)cpecucB1005
CsaV3_2G009600Wild cucumber (PI 183967)cpicucB080
CsaV3_2G009600Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G009600Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G009600Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G009600Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G009600Watermelon (97103) v2cucwmbB114
CsaV3_2G009600Wax gourdcucwgoB146
CsaV3_2G009600Silver-seed gourdcarcucB0005
CsaV3_2G009600Silver-seed gourdcarcucB0191
CsaV3_2G009600Cucumber (Gy14) v2cgybcucB064
CsaV3_2G009600Cucumber (Gy14) v1cgycucB287
CsaV3_2G009600Cucurbita maxima (Rimu)cmacucB0193
CsaV3_2G009600Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G009600Cucurbita moschata (Rifu)cmocucB0177