CsaV3_2G007340.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G007340.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 3711547 .. 3711777 (+)
Sequence length231
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCACTGTTTCATCTATACAATTGAATCCAAAAACCCTTTTTTTGGGTTATTTTCTCTTCACTGGCGACGGCGATTCCATCGTCTCTCTCGTCATTGCCGACGGCGACGGCCACTGCCTCCGTCATCCTCTCTTCAGCTTACCCGTCTGCCATTCGCCCTTCCCTTTGCTCAAAGATTTCTCACTCACTCATTCTCTCTTCAGTTAGATCAGTTTGCCGAAGCTTAG

mRNA sequence

ATGACCCACTGTTTCATCTATACAATTGAATCCAAAAACCCTTTTTTTGGGTTATTTTCTCTTCACTGGCGACGGCGATTCCATCGTCTCTCTCGTCATTGCCGACGGCGACGGCCACTGCCTCCGTCATCCTCTCTTCAGCTTACCCGTCTGCCATTCGCCCTTCCCTTTGCTCAAAGATTTCTCACTCACTCATTCTCTCTTCAGTTAGATCAGTTTGCCGAAGCTTAG

Coding sequence (CDS)

ATGACCCACTGTTTCATCTATACAATTGAATCCAAAAACCCTTTTTTTGGGTTATTTTCTCTTCACTGGCGACGGCGATTCCATCGTCTCTCTCGTCATTGCCGACGGCGACGGCCACTGCCTCCGTCATCCTCTCTTCAGCTTACCCGTCTGCCATTCGCCCTTCCCTTTGCTCAAAGATTTCTCACTCACTCATTCTCTCTTCAGTTAGATCAGTTTGCCGAAGCTTAG

Protein sequence

MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQRFLTHSFSLQLDQFAEA
Homology
[Close]
BLAST of CsaV3_2G007340.1 vs. NCBI nr
Match: KGN61030.1 (hypothetical protein Csa_2G034825 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60
          MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR
Sbjct: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60

Query: 61 FLTHSFSLQLDQFAEA 77
          FLTHSFSLQLDQFAEA
Sbjct: 61 FLTHSFSLQLDQFAEA 76

[Close]
BLAST of CsaV3_2G007340.1 vs. TrEMBL
Match: tr|A0A0A0LGK7|A0A0A0LGK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034825 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60
          MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR
Sbjct: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60

Query: 61 FLTHSFSLQLDQFAEA 77
          FLTHSFSLQLDQFAEA
Sbjct: 61 FLTHSFSLQLDQFAEA 76

The following BLAST results are available for this feature:
BLAST of CsaV3_2G007340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61030.12.1e-36100.00hypothetical protein Csa_2G034825 [Cucumis sativus][more]
BLAST of CsaV3_2G007340.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007340.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LGK7|A0A0A0LGK7_CUCSA1.4e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034825 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G007340CsaV3_2G007340gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G007340.1.exon1CsaV3_2G007340.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G007340.1.cds1CsaV3_2G007340.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G007340.1CsaV3_2G007340.1-proteinpolypeptide