CsaV3_2G007340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G007340
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 3711547 .. 3711777 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCACTGTTTCATCTATACAATTGAATCCAAAAACCCTTTTTTTGGGTTATTTTCTCTTCACTGGCGACGGCGATTCCATCGTCTCTCTCGTCATTGCCGACGGCGACGGCCACTGCCTCCGTCATCCTCTCTTCAGCTTACCCGTCTGCCATTCGCCCTTCCCTTTGCTCAAAGATTTCTCACTCACTCATTCTCTCTTCAGTTAGATCAGTTTGCCGAAGCTTAG

mRNA sequence

ATGACCCACTGTTTCATCTATACAATTGAATCCAAAAACCCTTTTTTTGGGTTATTTTCTCTTCACTGGCGACGGCGATTCCATCGTCTCTCTCGTCATTGCCGACGGCGACGGCCACTGCCTCCGTCATCCTCTCTTCAGCTTACCCGTCTGCCATTCGCCCTTCCCTTTGCTCAAAGATTTCTCACTCACTCATTCTCTCTTCAGTTAGATCAGTTTGCCGAAGCTTAG

Coding sequence (CDS)

ATGACCCACTGTTTCATCTATACAATTGAATCCAAAAACCCTTTTTTTGGGTTATTTTCTCTTCACTGGCGACGGCGATTCCATCGTCTCTCTCGTCATTGCCGACGGCGACGGCCACTGCCTCCGTCATCCTCTCTTCAGCTTACCCGTCTGCCATTCGCCCTTCCCTTTGCTCAAAGATTTCTCACTCACTCATTCTCTCTTCAGTTAGATCAGTTTGCCGAAGCTTAG

Protein sequence

MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQRFLTHSFSLQLDQFAEA
Homology
[Close]
BLAST of CsaV3_2G007340 vs. NCBI nr
Match: KGN61030.1 (hypothetical protein Csa_2G034825 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60
          MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR
Sbjct: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60

Query: 61 FLTHSFSLQLDQFAEA 77
          FLTHSFSLQLDQFAEA
Sbjct: 61 FLTHSFSLQLDQFAEA 76

[Close]
BLAST of CsaV3_2G007340 vs. TrEMBL
Match: tr|A0A0A0LGK7|A0A0A0LGK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034825 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60
          MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR
Sbjct: 1  MTHCFIYTIESKNPFFGLFSLHWRRRFHRLSRHCRRRRPLPPSSSLQLTRLPFALPFAQR 60

Query: 61 FLTHSFSLQLDQFAEA 77
          FLTHSFSLQLDQFAEA
Sbjct: 61 FLTHSFSLQLDQFAEA 76

The following BLAST results are available for this feature:
BLAST of CsaV3_2G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61030.12.1e-36100.00hypothetical protein Csa_2G034825 [Cucumis sativus][more]
BLAST of CsaV3_2G007340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LGK7|A0A0A0LGK7_CUCSA1.4e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034825 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G007340.1CsaV3_2G007340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G007340CsGy2G005160Cucumber (Gy14) v2cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G007340Silver-seed gourdcarcucB0598
CsaV3_2G007340Silver-seed gourdcarcucB0952
CsaV3_2G007340Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G007340Cucumber (Gy14) v1cgycucB097
CsaV3_2G007340Cucurbita maxima (Rimu)cmacucB0205
CsaV3_2G007340Cucurbita moschata (Rifu)cmocucB0069
CsaV3_2G007340Cucurbita moschata (Rifu)cmocucB0187
CsaV3_2G007340Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G007340Cucurbita pepo (Zucchini)cpecucB0115
CsaV3_2G007340Cucurbita pepo (Zucchini)cpecucB1017
CsaV3_2G007340Wild cucumber (PI 183967)cpicucB080
CsaV3_2G007340Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G007340Melon (DHL92) v3.5.1cucmeB119
CsaV3_2G007340Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G007340Melon (DHL92) v3.6.1cucmedB113
CsaV3_2G007340Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G007340Watermelon (Charleston Gray)cucwcgB137
CsaV3_2G007340Watermelon (97103) v1cucwmB159
CsaV3_2G007340Watermelon (97103) v2cucwmbB123
CsaV3_2G007340Wax gourdcucwgoB136
CsaV3_2G007340Wax gourdcucwgoB141