CsaV3_2G004950.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATGGAATGGAAGGCATGGGAGGCACTGCACTCGCCAACTCTCTGTACAGTAAATTTAAATGGATGAAGGAGCACTACTACAGTGAAGCTTTAGATAATCCTACAAGCCTTTTGTATATCCAAGGAAGAGAGATAGAGAGAGTTCCCTGGTTGTGGCCCCACCACCTTAAGCGTGAAGATGGTGAATTTGGAACCAATATCACAACAACCCATACAATATCCTTCAAACGCTATTTGATAGTCTTTTATGAAGAGGAGATGATTACATTTGTATTTCAATGGGAAACTATACGGCGTGTGATTAGATAA ATGCATGGAATGGAAGGCATGGGAGGCACTGCACTCGCCAACTCTCTGTACAGTAAATTTAAATGGATGAAGGAGCACTACTACAGTGAAGCTTTAGATAATCCTACAAGCCTTTTGTATATCCAAGGAAGAGAGATAGAGAGAGTTCCCTGGTTGTGGCCCCACCACCTTAAGCGTGAAGATGGTGAATTTGGAACCAATATCACAACAACCCATACAATATCCTTCAAACGCTATTTGATAGTCTTTTATGAAGAGGAGATGATTACATTTGTATTTCAATGGGAAACTATACGGCGTGTGATTAGATAA ATGCATGGAATGGAAGGCATGGGAGGCACTGCACTCGCCAACTCTCTGTACAGTAAATTTAAATGGATGAAGGAGCACTACTACAGTGAAGCTTTAGATAATCCTACAAGCCTTTTGTATATCCAAGGAAGAGAGATAGAGAGAGTTCCCTGGTTGTGGCCCCACCACCTTAAGCGTGAAGATGGTGAATTTGGAACCAATATCACAACAACCCATACAATATCCTTCAAACGCTATTTGATAGTCTTTTATGAAGAGGAGATGATTACATTTGTATTTCAATGGGAAACTATACGGCGTGTGATTAGATAA MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKREDGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR
BLAST of CsaV3_2G004950.1 vs. NCBI nr
Match: KGN60872.1 (hypothetical protein Csa_2G020950 [Cucumis sativus]) HSP 1 Score: 221.1 bits (562), Expect = 1.8e-54 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. NCBI nr
Match: ADN33671.1 (LRR disease resistance-like protein [Cucumis melo subsp. melo]) HSP 1 Score: 115.9 bits (289), Expect = 8.0e-23 Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. NCBI nr
Match: KGN60907.1 (hypothetical protein Csa_2G022270 [Cucumis sativus]) HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14 Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. NCBI nr
Match: XP_011648823.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus]) HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14 Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. NCBI nr
Match: ADU33178.1 (putative TIR-NBS-LRR-AAA+ATPase [Cucumis sativus]) HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14 Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. TrEMBL
Match: tr|A0A0A0LJI2|A0A0A0LJI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020950 PE=4 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. TrEMBL
Match: tr|E5GB29|E5GB29_CUCME (LRR disease resistance-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 5.3e-23 Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. TrEMBL
Match: tr|A0A0A0LJM0|A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022270 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14 Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. TrEMBL
Match: tr|E7CHD3|E7CHD3_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus OX=3659 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14 Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0
BLAST of CsaV3_2G004950.1 vs. TrEMBL
Match: tr|A0A1S3C088|A0A1S3C088_CUCME (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12 Identity = 50/91 (54.95%), Postives = 57/91 (62.64%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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