CsaV3_2G004950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G004950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLRR disease resistance-like protein
Locationchr2 : 2680808 .. 2681119 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGAATGGAAGGCATGGGAGGCACTGCACTCGCCAACTCTCTGTACAGTAAATTTAAATGGATGAAGGAGCACTACTACAGTGAAGCTTTAGATAATCCTACAAGCCTTTTGTATATCCAAGGAAGAGAGATAGAGAGAGTTCCCTGGTTGTGGCCCCACCACCTTAAGCGTGAAGATGGTGAATTTGGAACCAATATCACAACAACCCATACAATATCCTTCAAACGCTATTTGATAGTCTTTTATGAAGAGGAGATGATTACATTTGTATTTCAATGGGAAACTATACGGCGTGTGATTAGATAA

mRNA sequence

ATGCATGGAATGGAAGGCATGGGAGGCACTGCACTCGCCAACTCTCTGTACAGTAAATTTAAATGGATGAAGGAGCACTACTACAGTGAAGCTTTAGATAATCCTACAAGCCTTTTGTATATCCAAGGAAGAGAGATAGAGAGAGTTCCCTGGTTGTGGCCCCACCACCTTAAGCGTGAAGATGGTGAATTTGGAACCAATATCACAACAACCCATACAATATCCTTCAAACGCTATTTGATAGTCTTTTATGAAGAGGAGATGATTACATTTGTATTTCAATGGGAAACTATACGGCGTGTGATTAGATAA

Coding sequence (CDS)

ATGCATGGAATGGAAGGCATGGGAGGCACTGCACTCGCCAACTCTCTGTACAGTAAATTTAAATGGATGAAGGAGCACTACTACAGTGAAGCTTTAGATAATCCTACAAGCCTTTTGTATATCCAAGGAAGAGAGATAGAGAGAGTTCCCTGGTTGTGGCCCCACCACCTTAAGCGTGAAGATGGTGAATTTGGAACCAATATCACAACAACCCATACAATATCCTTCAAACGCTATTTGATAGTCTTTTATGAAGAGGAGATGATTACATTTGTATTTCAATGGGAAACTATACGGCGTGTGATTAGATAA

Protein sequence

MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKREDGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR
Homology
[Close]
BLAST of CsaV3_2G004950 vs. NCBI nr
Match: KGN60872.1 (hypothetical protein Csa_2G020950 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.8e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKRE 60
           MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKRE
Sbjct: 1   MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKRE 60

Query: 61  DGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR 104
           DGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR
Sbjct: 61  DGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR 103

[Close]
BLAST of CsaV3_2G004950 vs. NCBI nr
Match: ADN33671.1 (LRR disease resistance-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 115.9 bits (289), Expect = 8.0e-23
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 0 

Query: 1   MHGMEGMGGTALANSLYSKFKWM-------KEHYYSEALDNPTSLLYIQGREIERVPWLW 60
           ++G+EGMG T LANSL +KFKWM       KEH++SEALDN T   +I+GRE++   W W
Sbjct: 90  IYGLEGMGDTTLANSLCNKFKWMKDNLFGIKEHHHSEALDNSTGFFHIRGRELQLFSWSW 149

Query: 61  PHHLKREDGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR 104
            HH KR DG+ GTNI TTHTIS K YL++F+E E    +F W   +R I+
Sbjct: 150 AHHRKRGDGKRGTNI-TTHTISSKCYLMLFHEAENCNDIFDWVGTQRWIK 198

[Close]
BLAST of CsaV3_2G004950 vs. NCBI nr
Match: KGN60907.1 (hypothetical protein Csa_2G022270 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 3    GMEGMGGTALANSLYSKFKWMKEHYYS-EALDNPTSLLYIQGREIERVPWLWPHHLKRED 62
            GMEGMG T LANSL +KF W  ++  + EALDN TS L+ +G +     W   HH KR D
Sbjct: 1186 GMEGMGDTTLANSLCNKFNWPNDNVRAREALDNSTSFLHFRGGKFNGGSWSSSHHRKRGD 1245

Query: 63   GEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVI 103
            GE GTNI TT TIS KRYLI+F++      +F +    R+I
Sbjct: 1246 GERGTNI-TTRTISSKRYLILFHKAGSYDDLFNFAGSHRLI 1285

[Close]
BLAST of CsaV3_2G004950 vs. NCBI nr
Match: XP_011648823.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 3    GMEGMGGTALANSLYSKFKWMKEHYYS-EALDNPTSLLYIQGREIERVPWLWPHHLKRED 62
            GMEGMG T LANSL +KF W  ++  + EALDN TS L+ +G +     W   HH KR D
Sbjct: 1223 GMEGMGDTTLANSLCNKFNWPNDNVRAREALDNSTSFLHFRGGKFNGGSWSSSHHRKRGD 1282

Query: 63   GEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVI 103
            GE GTNI TT TIS KRYLI+F++      +F +    R+I
Sbjct: 1283 GERGTNI-TTRTISSKRYLILFHKAGSYDDLFNFAGSHRLI 1322

[Close]
BLAST of CsaV3_2G004950 vs. NCBI nr
Match: ADU33178.1 (putative TIR-NBS-LRR-AAA+ATPase [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 3   GMEGMGGTALANSLYSKFKWMKEHYYS-EALDNPTSLLYIQGREIERVPWLWPHHLKRED 62
           GMEGMG T LANSL +KF W  ++  + EALDN TS L+ +G +     W   HH KR D
Sbjct: 839 GMEGMGDTTLANSLCNKFNWPNDNVRAREALDNSTSFLHFRGGKFNGGSWSSSHHRKRGD 898

Query: 63  GEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVI 103
           GE GTNI TT TIS KRYLI+F++      +F +    R+I
Sbjct: 899 GERGTNI-TTRTISSKRYLILFHKAGSYDDLFNFAGSHRLI 938

[Close]
BLAST of CsaV3_2G004950 vs. TrEMBL
Match: tr|A0A0A0LJI2|A0A0A0LJI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020950 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKRE 60
           MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKRE
Sbjct: 1   MHGMEGMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWLWPHHLKRE 60

Query: 61  DGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR 104
           DGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR
Sbjct: 61  DGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR 103

[Close]
BLAST of CsaV3_2G004950 vs. TrEMBL
Match: tr|E5GB29|E5GB29_CUCME (LRR disease resistance-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.3e-23
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 0 

Query: 1   MHGMEGMGGTALANSLYSKFKWM-------KEHYYSEALDNPTSLLYIQGREIERVPWLW 60
           ++G+EGMG T LANSL +KFKWM       KEH++SEALDN T   +I+GRE++   W W
Sbjct: 90  IYGLEGMGDTTLANSLCNKFKWMKDNLFGIKEHHHSEALDNSTGFFHIRGRELQLFSWSW 149

Query: 61  PHHLKREDGEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVIR 104
            HH KR DG+ GTNI TTHTIS K YL++F+E E    +F W   +R I+
Sbjct: 150 AHHRKRGDGKRGTNI-TTHTISSKCYLMLFHEAENCNDIFDWVGTQRWIK 198

[Close]
BLAST of CsaV3_2G004950 vs. TrEMBL
Match: tr|A0A0A0LJM0|A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 3    GMEGMGGTALANSLYSKFKWMKEHYYS-EALDNPTSLLYIQGREIERVPWLWPHHLKRED 62
            GMEGMG T LANSL +KF W  ++  + EALDN TS L+ +G +     W   HH KR D
Sbjct: 1186 GMEGMGDTTLANSLCNKFNWPNDNVRAREALDNSTSFLHFRGGKFNGGSWSSSHHRKRGD 1245

Query: 63   GEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVI 103
            GE GTNI TT TIS KRYLI+F++      +F +    R+I
Sbjct: 1246 GERGTNI-TTRTISSKRYLILFHKAGSYDDLFNFAGSHRLI 1285

[Close]
BLAST of CsaV3_2G004950 vs. TrEMBL
Match: tr|E7CHD3|E7CHD3_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 3   GMEGMGGTALANSLYSKFKWMKEHYYS-EALDNPTSLLYIQGREIERVPWLWPHHLKRED 62
           GMEGMG T LANSL +KF W  ++  + EALDN TS L+ +G +     W   HH KR D
Sbjct: 839 GMEGMGDTTLANSLCNKFNWPNDNVRAREALDNSTSFLHFRGGKFNGGSWSSSHHRKRGD 898

Query: 63  GEFGTNITTTHTISFKRYLIVFYEEEMITFVFQWETIRRVI 103
           GE GTNI TT TIS KRYLI+F++      +F +    R+I
Sbjct: 899 GERGTNI-TTRTISSKRYLILFHKAGSYDDLFNFAGSHRLI 938

[Close]
BLAST of CsaV3_2G004950 vs. TrEMBL
Match: tr|A0A1S3C088|A0A1S3C088_CUCME (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 50/91 (54.95%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 6    GMGGTALANSLYSKFKWMKEHYYSEALDNPTSLLYIQGREIERVPWL-WPHHLKREDGEF 65
            GMGGTALANSL +KFK M E    EALDN TS  +I+ R++    W    HH K  DGE 
Sbjct: 1253 GMGGTALANSLCNKFKGM-EGQCGEALDNSTSFFHIKRRQLLSYSWSPAVHHRKCGDGER 1312

Query: 66   GTNITTTHTISFKRYLIVFYEEEMITFVFQW 96
            GTNI TTHTIS KRYLI+  E +    V  W
Sbjct: 1313 GTNI-TTHTISSKRYLILLREAKSYQDVHDW 1341

The following BLAST results are available for this feature:
BLAST of CsaV3_2G004950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60872.11.8e-54100.00hypothetical protein Csa_2G020950 [Cucumis sativus][more]
ADN33671.18.0e-2352.73LRR disease resistance-like protein [Cucumis melo subsp. melo][more]
KGN60907.12.3e-1449.50hypothetical protein Csa_2G022270 [Cucumis sativus][more]
XP_011648823.12.3e-1449.50PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus][more]
ADU33178.12.3e-1449.50putative TIR-NBS-LRR-AAA+ATPase [Cucumis sativus][more]
BLAST of CsaV3_2G004950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJI2|A0A0A0LJI2_CUCSA1.2e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020950 PE=4 SV=1[more]
tr|E5GB29|E5GB29_CUCME5.3e-2352.73LRR disease resistance-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 S... [more]
tr|A0A0A0LJM0|A0A0A0LJM0_CUCSA1.6e-1449.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022270 PE=4 SV=1[more]
tr|E7CHD3|E7CHD3_CUCSA1.6e-1449.50Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
tr|A0A1S3C088|A0A1S3C088_CUCME3.2e-1254.95TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G004950.1CsaV3_2G004950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G004950CSPI02G03620Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G004950Silver-seed gourdcarcucB0754
CsaV3_2G004950Silver-seed gourdcarcucB0940
CsaV3_2G004950Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G004950Cucumber (Gy14) v2cgybcucB064
CsaV3_2G004950Cucumber (Gy14) v1cgycucB097
CsaV3_2G004950Cucurbita maxima (Rimu)cmacucB0202
CsaV3_2G004950Cucurbita moschata (Rifu)cmocucB0185
CsaV3_2G004950Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G004950Cucurbita pepo (Zucchini)cpecucB0010
CsaV3_2G004950Cucurbita pepo (Zucchini)cpecucB0114
CsaV3_2G004950Cucurbita pepo (Zucchini)cpecucB1014
CsaV3_2G004950Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G004950Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G004950Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G004950Watermelon (Charleston Gray)cucwcgB137
CsaV3_2G004950Watermelon (97103) v1cucwmB159
CsaV3_2G004950Watermelon (97103) v2cucwmbB123