CsaV3_2G004840.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTATATATTATTATTTATTCCAAATCTTTTGGGCATGTCAAGTGGGACCTGTCACCCTTTCCTCATCACTCCAGCTCAATCCTCTTCACCATAGCCCATAACTTCTACTACAATTTATTTTCTCATATAAAATATTTTATTTGCCATGAGCCAAATTTTAATTGGAGAATTTTGATATCACCTTAGTTTTTCTTTTTTTCTAGATATATATATATATATAGCCAACTTCTTCTCAGATTTATTCATTTCTTTCTTTTCAAATTACAAGGAATGACGACGATGATGAGTTTTTACAAAAAGAGTCTCCACTCATTCTTATCCTTCACCGACAACCTTTCTTCCAAAACTTCACCACCTTTCAATAACTCTAATCCCCACCTTGAATTACACCATGCCTTAGGCTTAGGATTGATTAACTCCGATCATACCAATGCCACGCAATTCAATAAATCTCCAAATATTCTTGAATCTTCCTCCCTCATTAAACCTTCTCTTTCCTCGTCCAGAAAAGACCCCGGTGGGGTCGGTTTCATCGACGATGTTGGCGGCGGCGTCGACGGGTTGATGTCGTGCACTGAGAGCCTTGGATTTGAGAGCTCCGATGAGAGATTGGTGAATGATGAATTGACGACGATGGAGGATAATTGCGGCGGGTGGTGTATGTCGAGGGTGCGGCGGAGGAAGGTGGTGGCGGAAGAGAGGAAGTTTCCACCACCGTTGACGTCGCTGAATCAACATGGACATCCGAATTTTTATCTCCGGTCAGTGAGGAAAGATGGGAGATTGGAGCTGACGGAGGTTAGGATCGAACGGACCGAGATTCTTCGAGCGTGTCGTGGAGATGGACGGTTGAGATTGCATCTTATCAAAGATGAAGAACAAGGAGAAAAAGATGGCGGCGACAGGGAGAAGGAAGGTGGGATTGAAGAGGAGGAGGAGAAAGACGAAAAGGAAGAGGAAGAAGAAGAAGTGGAGGGGTTAGTGAAGGAAGGAAAAATGGAATTTAGGCGATGTGTGGAGATGATAAAGCACCAGCGTCGCCATGAGCACCACCGTAGCCACCACCAGCATTTGGATGTGTGGAGACAGCACTGCGTTACAACAAGTTAAGAATTATTTTTTATAAGTTAAGTCGGTAGAATTAAGTAATTAATGAAAGCGGTGGGTGTGCATAAACAATGAGAAATTATTATTATTATTATTATCATCATCATCATTATTATTATTAATTTGTGTGGAATGTCAATTTACCAATATCTTTACATTCCTTTTCTTCTTTTAAAAAATGTCATTTTTTTTCCTTCTTCTTGGCTCTAGATAATTGGAATATCATGTAATGCAAACTCCAAGATGAAATTCCCCCACTTGCATTTTTTATTTTCTTTGTAGGTTAAAATGATAAAGATTGATAAATATATCAATTAGATAATTACGATTGCTTTTATCAAAAAATTAAATAAAAGGGGAAACGTGGGTTTTTATTGGTTGAATTCAATTTTGACTGTGTGTTGTTAGAGGGGATTTGGATTGACTTTAGCTAATAAGAATAAGAATATAAATAACCAAAGCAATGGAGA ATGACGACGATGATGAGTTTTTACAAAAAGAGTCTCCACTCATTCTTATCCTTCACCGACAACCTTTCTTCCAAAACTTCACCACCTTTCAATAACTCTAATCCCCACCTTGAATTACACCATGCCTTAGGCTTAGGATTGATTAACTCCGATCATACCAATGCCACGCAATTCAATAAATCTCCAAATATTCTTGAATCTTCCTCCCTCATTAAACCTTCTCTTTCCTCGTCCAGAAAAGACCCCGGTGGGGTCGGTTTCATCGACGATGTTGGCGGCGGCGTCGACGGGTTGATGTCGTGCACTGAGAGCCTTGGATTTGAGAGCTCCGATGAGAGATTGGTGAATGATGAATTGACGACGATGGAGGATAATTGCGGCGGGTGGTGTATGTCGAGGGTGCGGCGGAGGAAGGTGGTGGCGGAAGAGAGGAAGTTTCCACCACCGTTGACGTCGCTGAATCAACATGGACATCCGAATTTTTATCTCCGGTCAGTGAGGAAAGATGGGAGATTGGAGCTGACGGAGGTTAGGATCGAACGGACCGAGATTCTTCGAGCGTGTCGTGGAGATGGACGGTTGAGATTGCATCTTATCAAAGATGAAGAACAAGGAGAAAAAGATGGCGGCGACAGGGAGAAGGAAGGTGGGATTGAAGAGGAGGAGGAGAAAGACGAAAAGGAAGAGGAAGAAGAAGAAGTGGAGGGGTTAGTGAAGGAAGGAAAAATGGAATTTAGGCGATGTGTGGAGATGATAAAGCACCAGCGTCGCCATGAGCACCACCGTAGCCACCACCAGCATTTGGATGTGTGGAGACAGCACTGCGTTACAACAAGTTAA ATGACGACGATGATGAGTTTTTACAAAAAGAGTCTCCACTCATTCTTATCCTTCACCGACAACCTTTCTTCCAAAACTTCACCACCTTTCAATAACTCTAATCCCCACCTTGAATTACACCATGCCTTAGGCTTAGGATTGATTAACTCCGATCATACCAATGCCACGCAATTCAATAAATCTCCAAATATTCTTGAATCTTCCTCCCTCATTAAACCTTCTCTTTCCTCGTCCAGAAAAGACCCCGGTGGGGTCGGTTTCATCGACGATGTTGGCGGCGGCGTCGACGGGTTGATGTCGTGCACTGAGAGCCTTGGATTTGAGAGCTCCGATGAGAGATTGGTGAATGATGAATTGACGACGATGGAGGATAATTGCGGCGGGTGGTGTATGTCGAGGGTGCGGCGGAGGAAGGTGGTGGCGGAAGAGAGGAAGTTTCCACCACCGTTGACGTCGCTGAATCAACATGGACATCCGAATTTTTATCTCCGGTCAGTGAGGAAAGATGGGAGATTGGAGCTGACGGAGGTTAGGATCGAACGGACCGAGATTCTTCGAGCGTGTCGTGGAGATGGACGGTTGAGATTGCATCTTATCAAAGATGAAGAACAAGGAGAAAAAGATGGCGGCGACAGGGAGAAGGAAGGTGGGATTGAAGAGGAGGAGGAGAAAGACGAAAAGGAAGAGGAAGAAGAAGAAGTGGAGGGGTTAGTGAAGGAAGGAAAAATGGAATTTAGGCGATGTGTGGAGATGATAAAGCACCAGCGTCGCCATGAGCACCACCGTAGCCACCACCAGCATTTGGATGTGTGGAGACAGCACTGCGTTACAACAAGTTAA MTTMMSFYKKSLHSFLSFTDNLSSKTSPPFNNSNPHLELHHALGLGLINSDHTNATQFNKSPNILESSSLIKPSLSSSRKDPGGVGFIDDVGGGVDGLMSCTESLGFESSDERLVNDELTTMEDNCGGWCMSRVRRRKVVAEERKFPPPLTSLNQHGHPNFYLRSVRKDGRLELTEVRIERTEILRACRGDGRLRLHLIKDEEQGEKDGGDREKEGGIEEEEEKDEKEEEEEEVEGLVKEGKMEFRRCVEMIKHQRRHEHHRSHHQHLDVWRQHCVTTS
BLAST of CsaV3_2G004840.1 vs. NCBI nr
Match: XP_011648796.1 (PREDICTED: protein FANTASTIC FOUR 4 [Cucumis sativus] >KGN60862.1 hypothetical protein Csa_2G020850 [Cucumis sativus]) HSP 1 Score: 479.6 bits (1233), Expect = 7.5e-132 Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. NCBI nr
Match: XP_008455263.1 (PREDICTED: protein FANTASTIC FOUR 1 [Cucumis melo]) HSP 1 Score: 404.1 bits (1037), Expect = 4.0e-109 Identity = 255/295 (86.44%), Postives = 256/295 (86.78%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. NCBI nr
Match: XP_022965897.1 (uncharacterized protein LOC111465645 [Cucurbita maxima]) HSP 1 Score: 231.9 bits (590), Expect = 2.7e-57 Identity = 155/279 (55.56%), Postives = 178/279 (63.80%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. NCBI nr
Match: XP_022937985.1 (uncharacterized protein LOC111444206 [Cucurbita moschata]) HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51 Identity = 155/280 (55.36%), Postives = 178/280 (63.57%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. NCBI nr
Match: XP_023521579.1 (uncharacterized protein LOC111785403 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 211.1 bits (536), Expect = 4.9e-51 Identity = 154/281 (54.80%), Postives = 178/281 (63.35%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TAIR10
Match: AT1G54740.1 (Protein of unknown function (DUF3049)) HSP 1 Score: 99.4 bits (246), Expect = 3.8e-21 Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TAIR10
Match: AT3G63020.1 (Protein of unknown function (DUF3049)) HSP 1 Score: 53.1 bits (126), Expect = 3.1e-07 Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TAIR10
Match: AT5G19260.1 (Protein of unknown function (DUF3049)) HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06 Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TAIR10
Match: AT1G22110.1 (structural constituent of ribosome) HSP 1 Score: 47.4 bits (111), Expect = 1.7e-05 Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TAIR10
Match: AT5G22390.1 (Protein of unknown function (DUF3049)) HSP 1 Score: 46.2 bits (108), Expect = 3.8e-05 Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. Swiss-Prot
Match: sp|Q6NMR8|FAF3_ARATH (Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana OX=3702 GN=FAF3 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.8e-05 Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TrEMBL
Match: tr|A0A0A0LJH1|A0A0A0LJH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020850 PE=4 SV=1) HSP 1 Score: 479.6 bits (1233), Expect = 4.9e-132 Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TrEMBL
Match: tr|A0A1S3C034|A0A1S3C034_CUCME (protein FANTASTIC FOUR 1 OS=Cucumis melo OX=3656 GN=LOC103495465 PE=4 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 2.6e-109 Identity = 255/295 (86.44%), Postives = 256/295 (86.78%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TrEMBL
Match: tr|W9SXK1|W9SXK1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020661 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44 Identity = 159/306 (51.96%), Postives = 195/306 (63.73%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TrEMBL
Match: tr|A9PJD2|A9PJD2_9ROSI (Uncharacterized protein OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.8e-42 Identity = 112/225 (49.78%), Postives = 141/225 (62.67%), Query Frame = 0
BLAST of CsaV3_2G004840.1 vs. TrEMBL
Match: tr|A0A2K1Y025|A0A2K1Y025_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G027100v3 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41 Identity = 110/224 (49.11%), Postives = 141/224 (62.95%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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