CsaV3_2G002650.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G002650.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Reticulon-like protein
Location	chr2 : 1157074 .. 1157363 (+)
Sequence length	257

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACTCTTCTGAAACCGTACAAACTAAGGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGAAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTCTATTTTTTTTCATCCCTAAAAGTGACCATAAATGA

mRNA sequence

GGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGAAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTCTATTTTTTTTCATCCCTAAAAGTGACCATAAATG

Coding sequence (CDS)

GGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGAAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTCTATTTTTTTTCATCCCTAAAAGTGACCATAAATG

Protein sequence

GVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLKKKQHVHRVLGAEKRTANLSLCFSNSLFFFIPKSDHKX

Homology

[Close]

BLAST of CsaV3_2G002650.1 vs. NCBI nr
Match: KGN45697.1 (hypothetical protein Csa_6G006830 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 8.7e-07
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQ  IT SPPP SN +KMD S  L             +KKQ VHRVLGA 
Sbjct: 13 VEIADDNINNDQHPITPSPPPSSNFNKMDHSLPLSPEDETAESSQMLEKKQPVHRVLGAG 72

Query: 62 K 63
          K
Sbjct: 73 K 73

[Close]

BLAST of CsaV3_2G002650.1 vs. NCBI nr
Match: XP_008458672.1 (PREDICTED: reticulon-like protein B2 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQQ IT SPP  SNSDK+D SP               +KKQ VHRVLG+ 
Sbjct: 13 VEIADDNINNDQQPITPSPPLSSNSDKVDHSP---PEDEAAESSEMLRKKQPVHRVLGSG 70

Query: 62 K 63
          K
Sbjct: 73 K 70

[Close]

BLAST of CsaV3_2G002650.1 vs. TrEMBL
Match: tr|A0A0A0KBC8|A0A0A0KBC8_CUCSA (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G006830 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQ  IT SPPP SN +KMD S  L             +KKQ VHRVLGA 
Sbjct: 13 VEIADDNINNDQHPITPSPPPSSNFNKMDHSLPLSPEDETAESSQMLEKKQPVHRVLGAG 72

Query: 62 K 63
          K
Sbjct: 73 K 73

[Close]

BLAST of CsaV3_2G002650.1 vs. TrEMBL
Match: tr|A0A1S3C9M8|A0A1S3C9M8_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103498001 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQQ IT SPP  SNSDK+D SP               +KKQ VHRVLG+ 
Sbjct: 13 VEIADDNINNDQQPITPSPPLSSNSDKVDHSP---PEDEAAESSEMLRKKQPVHRVLGSG 70

Query: 62 K 63
          K
Sbjct: 73 K 70

The following BLAST results are available for this feature:

BLAST of CsaV3_2G002650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45697.1	8.7e-07	59.02	hypothetical protein Csa_6G006830 [Cucumis sativus]	[more]
XP_008458672.1	4.3e-06	59.02	PREDICTED: reticulon-like protein B2 [Cucumis melo]	[more]

BLAST of CsaV3_2G002650.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G002650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G002650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBC8\|A0A0A0KBC8_CUCSA	5.8e-07	59.02	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G006830 PE=4 SV=1	[more]
tr\|A0A1S3C9M8\|A0A1S3C9M8_CUCME	2.9e-06	59.02	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103498001 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G002650	CsaV3_2G002650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002650.1.exon1	CsaV3_2G002650.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002650.1.cds1	CsaV3_2G002650.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002650.1	CsaV3_2G002650.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..31