CsaV3_2G002650 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G002650
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionReticulon-like protein
Locationchr2 : 1157074 .. 1157363 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACTCTTCTGAAACCGTACAAACTAAGGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGAAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTCTATTTTTTTTCATCCCTAAAAGTGACCATAAATGA

mRNA sequence

GGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGAAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTCTATTTTTTTTCATCCCTAAAAGTGACCATAAATG

Coding sequence (CDS)

GGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGAAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTCTATTTTTTTTCATCCCTAAAAGTGACCATAAATG

Protein sequence

GVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLKKKQHVHRVLGAEKRTANLSLCFSNSLFFFIPKSDHKX
Homology
[Close]
BLAST of CsaV3_2G002650 vs. NCBI nr
Match: KGN45697.1 (hypothetical protein Csa_6G006830 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 8.7e-07
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQ  IT SPPP SN +KMD S  L             +KKQ VHRVLGA 
Sbjct: 13 VEIADDNINNDQHPITPSPPPSSNFNKMDHSLPLSPEDETAESSQMLEKKQPVHRVLGAG 72

Query: 62 K 63
          K
Sbjct: 73 K 73

[Close]
BLAST of CsaV3_2G002650 vs. NCBI nr
Match: XP_008458672.1 (PREDICTED: reticulon-like protein B2 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQQ IT SPP  SNSDK+D SP               +KKQ VHRVLG+ 
Sbjct: 13 VEIADDNINNDQQPITPSPPLSSNSDKVDHSP---PEDEAAESSEMLRKKQPVHRVLGSG 70

Query: 62 K 63
          K
Sbjct: 73 K 70

[Close]
BLAST of CsaV3_2G002650 vs. TrEMBL
Match: tr|A0A0A0KBC8|A0A0A0KBC8_CUCSA (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G006830 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQ  IT SPPP SN +KMD S  L             +KKQ VHRVLGA 
Sbjct: 13 VEIADDNINNDQHPITPSPPPSSNFNKMDHSLPLSPEDETAESSQMLEKKQPVHRVLGAG 72

Query: 62 K 63
          K
Sbjct: 73 K 73

[Close]
BLAST of CsaV3_2G002650 vs. TrEMBL
Match: tr|A0A1S3C9M8|A0A1S3C9M8_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103498001 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 2  VEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLXXXXXXXXXXXXXKKKQHVHRVLGAE 61
          VEIADDNINNDQQ IT SPP  SNSDK+D SP               +KKQ VHRVLG+ 
Sbjct: 13 VEIADDNINNDQQPITPSPPLSSNSDKVDHSP---PEDEAAESSEMLRKKQPVHRVLGSG 70

Query: 62 K 63
          K
Sbjct: 73 K 70

The following BLAST results are available for this feature:
BLAST of CsaV3_2G002650 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45697.18.7e-0759.02hypothetical protein Csa_6G006830 [Cucumis sativus][more]
XP_008458672.14.3e-0659.02PREDICTED: reticulon-like protein B2 [Cucumis melo][more]
BLAST of CsaV3_2G002650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G002650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G002650 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBC8|A0A0A0KBC8_CUCSA5.8e-0759.02Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G006830 PE=4 SV=1[more]
tr|A0A1S3C9M8|A0A1S3C9M8_CUCME2.9e-0659.02Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103498001 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G002650.1CsaV3_2G002650.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G002650CSPI02G01500Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G002650Silver-seed gourdcarcucB0044
CsaV3_2G002650Silver-seed gourdcarcucB0045
CsaV3_2G002650Silver-seed gourdcarcucB0147
CsaV3_2G002650Silver-seed gourdcarcucB0286
CsaV3_2G002650Silver-seed gourdcarcucB0605
CsaV3_2G002650Silver-seed gourdcarcucB1016
CsaV3_2G002650Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G002650Cucumber (Gy14) v2cgybcucB015
CsaV3_2G002650Cucumber (Gy14) v2cgybcucB064
CsaV3_2G002650Cucumber (Gy14) v2cgybcucB067
CsaV3_2G002650Cucumber (Gy14) v2cgybcucB324
CsaV3_2G002650Cucumber (Gy14) v1cgycucB248
CsaV3_2G002650Cucurbita maxima (Rimu)cmacucB0081
CsaV3_2G002650Cucurbita maxima (Rimu)cmacucB0129
CsaV3_2G002650Cucurbita maxima (Rimu)cmacucB0135
CsaV3_2G002650Cucurbita maxima (Rimu)cmacucB0202
CsaV3_2G002650Cucurbita maxima (Rimu)cmacucB0199
CsaV3_2G002650Cucurbita moschata (Rifu)cmocucB0070
CsaV3_2G002650Cucurbita moschata (Rifu)cmocucB0116
CsaV3_2G002650Cucurbita moschata (Rifu)cmocucB0120
CsaV3_2G002650Cucurbita moschata (Rifu)cmocucB0183
CsaV3_2G002650Cucurbita moschata (Rifu)cmocucB0185
CsaV3_2G002650Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G002650Cucurbita pepo (Zucchini)cpecucB0114
CsaV3_2G002650Cucurbita pepo (Zucchini)cpecucB0450
CsaV3_2G002650Cucurbita pepo (Zucchini)cpecucB0826
CsaV3_2G002650Cucurbita pepo (Zucchini)cpecucB1012
CsaV3_2G002650Cucurbita pepo (Zucchini)cpecucB1015
CsaV3_2G002650Wild cucumber (PI 183967)cpicucB021
CsaV3_2G002650Wild cucumber (PI 183967)cpicucB084
CsaV3_2G002650Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G002650Bottle gourd (USVL1VR-Ls)cuclsiB150
CsaV3_2G002650Bottle gourd (USVL1VR-Ls)cuclsiB126
CsaV3_2G002650Bottle gourd (USVL1VR-Ls)cuclsiB142
CsaV3_2G002650Bottle gourd (USVL1VR-Ls)cuclsiB154
CsaV3_2G002650Melon (DHL92) v3.5.1cucmeB108
CsaV3_2G002650Melon (DHL92) v3.5.1cucmeB116
CsaV3_2G002650Melon (DHL92) v3.5.1cucmeB126
CsaV3_2G002650Melon (DHL92) v3.5.1cucmeB142
CsaV3_2G002650Melon (DHL92) v3.6.1cucmedB110
CsaV3_2G002650Melon (DHL92) v3.6.1cucmedB120
CsaV3_2G002650Melon (DHL92) v3.6.1cucmedB135
CsaV3_2G002650Watermelon (Charleston Gray)cucwcgB107
CsaV3_2G002650Watermelon (Charleston Gray)cucwcgB112
CsaV3_2G002650Watermelon (Charleston Gray)cucwcgB156
CsaV3_2G002650Watermelon (Charleston Gray)cucwcgB172
CsaV3_2G002650Watermelon (Charleston Gray)cucwcgB175
CsaV3_2G002650Watermelon (97103) v1cucwmB117
CsaV3_2G002650Watermelon (97103) v1cucwmB123
CsaV3_2G002650Watermelon (97103) v1cucwmB174
CsaV3_2G002650Watermelon (97103) v1cucwmB180
CsaV3_2G002650Watermelon (97103) v2cucwmbB108
CsaV3_2G002650Watermelon (97103) v2cucwmbB143
CsaV3_2G002650Watermelon (97103) v2cucwmbB159
CsaV3_2G002650Watermelon (97103) v2cucwmbB162
CsaV3_2G002650Wax gourdcucwgoB138
CsaV3_2G002650Wax gourdcucwgoB177
CsaV3_2G002650Wax gourdcucwgoB219
CsaV3_2G002650Cucumber (Chinese Long) v3cuccucB006
CsaV3_2G002650Cucumber (Chinese Long) v3cuccucB065
CsaV3_2G002650Cucumber (Chinese Long) v3cuccucB104