CsaV3_2G001330.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G001330.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 312504 .. 313899 (+)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGGTACTGGAAGCGTCTTTGAAGCTTTATTAGGTGTGGCACTCGACTTGCTTGTTTCTGCCAGTTGAGTTGAATATTCTTATTTTGCTTCATGCTTTTCTACTTTGTTTTCTGCTACGTGGAAGCTTTGGATTTTTAAGGACAGTTGCACCGATTGAGTACATAACAGTATTAAGAATGAAATTTTCCAGCTCCTTATTTATTTATTATTTCTATTACACGTTAGATGCAAATCACAACTTCAAATTTCAATTGAAACATAATCCAAATTTTGGTTCAGTAATATACACACGATTTTATGTTATTTTATGTTATTTTAGTTTACGATCCTTCATACTTCAGAGTTTTTAAGACTGCTTTGTATTGTATGTTAGAATTTTGGAGTGTCTGTATTGTATTGTAATTCAAAATCTATGTTAGAATTGAGTTGAACAATTTGAATTTGTTATGCAATTTTCAATCCAACCCTTTTTTTTATTGTTTACAATTTTATATTTTTCATTTTCGATTACTCAAACATTTCTCTCATTTCTAGTAGACTAAATTCTTAGAGTAATTTTGTTTGGTTCCTATTTGTTAATTATTTGCTACCATTTTATTATTAAATGAAATTGTAAATTTTGAAACATAAGAGAAATTGTAGCATGCTAAAACCTATGAATTAAAAATTTAAGGACCCAAGCTGTAATATTTTGATACAAACTAAAATTAAAGAAATGTACTCAATTTTGAAAAAGGAAAGACAGAAAATGAAATTGTTTAATAGTTAATAAACAGGGCCTAAAAATATAAAATTTGAAAATCAGCGACTAAATAATAATTAGATTAAAACTTGGGACCAAAAATCAATTTCCCCTCCATTTTATATTAGAAAAAAACACTACTTTCCCTCTTTTGCAAATAATTAATTGAAAAAAAAAAAAAAAAAAACCCTAGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACGTAAGCATTCTTCTGTATCGAGGTCCACACACAAGTCTTCTGCAACTCCCTCCATCTCCAAGCCACTCGTTGCTTGTTGAGTTTGATCTTAGGGTTTAACGAACTTTGGCTAGGGTTTTATTTGTGTTTGTTTAATTTTTTTTCCCTGTGTTTGTTGGGCTGTTTTAGTTATATTCTGCTCATGTTCCGTTTCCATTTCTCTCTCTTTTAATTGTCTCAGCTTCATTCTACTGTTAG

mRNA sequence

ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACCTTCATTCTACTGTTAG

Coding sequence (CDS)

ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACCTTCATTCTACTGTTAG

Protein sequence

MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFSISASTSTSASRHRILPSFYC
Homology
[Close]
BLAST of CsaV3_2G001330.1 vs. NCBI nr
Match: KGN60523.1 (hypothetical protein Csa_2G000320 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60
          MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS
Sbjct: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60

Query: 61 ISASTSTSASRHRILPSFYC 81
          ISASTSTSASRHRILPSFYC
Sbjct: 61 ISASTSTSASRHRILPSFYC 80

[Close]
BLAST of CsaV3_2G001330.1 vs. TrEMBL
Match: tr|A0A0A0LFQ6|A0A0A0LFQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000320 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60
          MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS
Sbjct: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60

Query: 61 ISASTSTSASRHRILPSFYC 81
          ISASTSTSASRHRILPSFYC
Sbjct: 61 ISASTSTSASRHRILPSFYC 80

The following BLAST results are available for this feature:
BLAST of CsaV3_2G001330.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60523.11.3e-36100.00hypothetical protein Csa_2G000320 [Cucumis sativus][more]
BLAST of CsaV3_2G001330.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G001330.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G001330.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFQ6|A0A0A0LFQ6_CUCSA8.6e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G001330CsaV3_2G001330gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G001330.1CsaV3_2G001330.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G001330.1.exon1CsaV3_2G001330.1.exon1exon
CsaV3_2G001330.1.exon2CsaV3_2G001330.1.exon2exon
CsaV3_2G001330.1.exon3CsaV3_2G001330.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G001330.1.cds1CsaV3_2G001330.1.cds1CDS
CsaV3_2G001330.1.cds2CsaV3_2G001330.1.cds2CDS
CsaV3_2G001330.1.cds3CsaV3_2G001330.1.cds3CDS