CsaV3_2G001330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G001330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 312504 .. 313899 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGGTACTGGAAGCGTCTTTGAAGCTTTATTAGGTGTGGCACTCGACTTGCTTGTTTCTGCCAGTTGAGTTGAATATTCTTATTTTGCTTCATGCTTTTCTACTTTGTTTTCTGCTACGTGGAAGCTTTGGATTTTTAAGGACAGTTGCACCGATTGAGTACATAACAGTATTAAGAATGAAATTTTCCAGCTCCTTATTTATTTATTATTTCTATTACACGTTAGATGCAAATCACAACTTCAAATTTCAATTGAAACATAATCCAAATTTTGGTTCAGTAATATACACACGATTTTATGTTATTTTATGTTATTTTAGTTTACGATCCTTCATACTTCAGAGTTTTTAAGACTGCTTTGTATTGTATGTTAGAATTTTGGAGTGTCTGTATTGTATTGTAATTCAAAATCTATGTTAGAATTGAGTTGAACAATTTGAATTTGTTATGCAATTTTCAATCCAACCCTTTTTTTTATTGTTTACAATTTTATATTTTTCATTTTCGATTACTCAAACATTTCTCTCATTTCTAGTAGACTAAATTCTTAGAGTAATTTTGTTTGGTTCCTATTTGTTAATTATTTGCTACCATTTTATTATTAAATGAAATTGTAAATTTTGAAACATAAGAGAAATTGTAGCATGCTAAAACCTATGAATTAAAAATTTAAGGACCCAAGCTGTAATATTTTGATACAAACTAAAATTAAAGAAATGTACTCAATTTTGAAAAAGGAAAGACAGAAAATGAAATTGTTTAATAGTTAATAAACAGGGCCTAAAAATATAAAATTTGAAAATCAGCGACTAAATAATAATTAGATTAAAACTTGGGACCAAAAATCAATTTCCCCTCCATTTTATATTAGAAAAAAACACTACTTTCCCTCTTTTGCAAATAATTAATTGAAAAAAAAAAAAAAAAAAACCCTAGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACGTAAGCATTCTTCTGTATCGAGGTCCACACACAAGTCTTCTGCAACTCCCTCCATCTCCAAGCCACTCGTTGCTTGTTGAGTTTGATCTTAGGGTTTAACGAACTTTGGCTAGGGTTTTATTTGTGTTTGTTTAATTTTTTTTCCCTGTGTTTGTTGGGCTGTTTTAGTTATATTCTGCTCATGTTCCGTTTCCATTTCTCTCTCTTTTAATTGTCTCAGCTTCATTCTACTGTTAG

mRNA sequence

ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACCTTCATTCTACTGTTAG

Coding sequence (CDS)

ATGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGTCCCGTGACCTCCATCACCCTCTTCACTCCTCTCCATTATTTCACTCCAAGGTATCCGCAGCGCGCCACAAGCATCTTTAACATCCCCTCCCACTCATTCTTCTCAATCTCTGCTTCTACTTCTACTTCCGCATCCCGCCATCGTATTCTACCTTCATTCTACTGTTAG

Protein sequence

MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFSISASTSTSASRHRILPSFYC
Homology
[Close]
BLAST of CsaV3_2G001330 vs. NCBI nr
Match: KGN60523.1 (hypothetical protein Csa_2G000320 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60
          MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS
Sbjct: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60

Query: 61 ISASTSTSASRHRILPSFYC 81
          ISASTSTSASRHRILPSFYC
Sbjct: 61 ISASTSTSASRHRILPSFYC 80

[Close]
BLAST of CsaV3_2G001330 vs. TrEMBL
Match: tr|A0A0A0LFQ6|A0A0A0LFQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000320 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60
          MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS
Sbjct: 1  MRLCVYAVSKVENICVLSLSGQYLCPVTSITLFTPLHYFTPRYPQRATSIFNIPSHSFFS 60

Query: 61 ISASTSTSASRHRILPSFYC 81
          ISASTSTSASRHRILPSFYC
Sbjct: 61 ISASTSTSASRHRILPSFYC 80

The following BLAST results are available for this feature:
BLAST of CsaV3_2G001330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60523.11.3e-36100.00hypothetical protein Csa_2G000320 [Cucumis sativus][more]
BLAST of CsaV3_2G001330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G001330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G001330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFQ6|A0A0A0LFQ6_CUCSA8.6e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G001330.1CsaV3_2G001330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G001330Cucumber (Chinese Long) v3cuccucB011
CsaV3_2G001330Silver-seed gourdcarcucB0110
CsaV3_2G001330Silver-seed gourdcarcucB0223
CsaV3_2G001330Silver-seed gourdcarcucB0605
CsaV3_2G001330Silver-seed gourdcarcucB0926
CsaV3_2G001330Silver-seed gourdcarcucB0933
CsaV3_2G001330Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G001330Cucumber (Gy14) v2cgybcucB020
CsaV3_2G001330Cucumber (Gy14) v2cgybcucB064
CsaV3_2G001330Cucumber (Gy14) v1cgycucB156
CsaV3_2G001330Cucurbita maxima (Rimu)cmacucB0081
CsaV3_2G001330Cucurbita maxima (Rimu)cmacucB0135
CsaV3_2G001330Cucurbita maxima (Rimu)cmacucB0202
CsaV3_2G001330Cucurbita maxima (Rimu)cmacucB0197
CsaV3_2G001330Cucurbita maxima (Rimu)cmacucB0525
CsaV3_2G001330Cucurbita moschata (Rifu)cmocucB0070
CsaV3_2G001330Cucurbita moschata (Rifu)cmocucB0120
CsaV3_2G001330Cucurbita moschata (Rifu)cmocucB0181
CsaV3_2G001330Cucurbita moschata (Rifu)cmocucB0265
CsaV3_2G001330Cucurbita moschata (Rifu)cmocucB0511
CsaV3_2G001330Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G001330Cucurbita pepo (Zucchini)cpecucB0114
CsaV3_2G001330Cucurbita pepo (Zucchini)cpecucB0450
CsaV3_2G001330Cucurbita pepo (Zucchini)cpecucB0678
CsaV3_2G001330Cucurbita pepo (Zucchini)cpecucB0826
CsaV3_2G001330Cucurbita pepo (Zucchini)cpecucB1010
CsaV3_2G001330Wild cucumber (PI 183967)cpicucB024
CsaV3_2G001330Wild cucumber (PI 183967)cpicucB080
CsaV3_2G001330Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G001330Bottle gourd (USVL1VR-Ls)cuclsiB145
CsaV3_2G001330Melon (DHL92) v3.5.1cucmeB117
CsaV3_2G001330Melon (DHL92) v3.5.1cucmeB142
CsaV3_2G001330Melon (DHL92) v3.6.1cucmedB109
CsaV3_2G001330Melon (DHL92) v3.6.1cucmedB135
CsaV3_2G001330Watermelon (Charleston Gray)cucwcgB112
CsaV3_2G001330Watermelon (Charleston Gray)cucwcgB146
CsaV3_2G001330Watermelon (97103) v1cucwmB128
CsaV3_2G001330Watermelon (97103) v1cucwmB174
CsaV3_2G001330Watermelon (97103) v2cucwmbB108
CsaV3_2G001330Watermelon (97103) v2cucwmbB133
CsaV3_2G001330Watermelon (97103) v2cucwmbB157
CsaV3_2G001330Wax gourdcucwgoB137
CsaV3_2G001330Wax gourdcucwgoB216