CsaV3_1G034250.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G034250.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RING-H2 finger protein ATL64-like
Location	chr1 : 21458448 .. 21458934 (-)
Sequence length	168

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTTTTAGTCTTCACGTTTCTCTTCACTTTACTATGTTTCTACCTTATCACTCTAGACAGTGAAAGAGTTGTCAAATCTAATCGCAAAAAGTTGCTTGAGACTTTAGAGATTGAAGTACCAAATTTTAGTTAGTACGGAGATGACGACGACAATCAGACAAATTGTATGATCTGCCTTTGCAAAATTGAAGAAGGGAAGAAGTGTAGAAGGATGAGCACGTGCGATCACATGTTTCATAGAGATTGCATTGACCGATGGCTTACGATGGATTGGTGGTTTATAGTAAACAGTAGTTGTCCACTTTGTCGAGCTGCCATTTGTGTGGTGGTTTGATTAGATTAGTAGTGATGAAAATATAACGAGAAATGACTAGAAATAGGAATTGGGGGTGGAGCCTTATTTGATTGTTTTTAAATTTATTATGAACCTATCACTAAAAATTACATTAATATATGTTGGATCGGTATGGCAACCCTAGAGGGGGG

mRNA sequence

ATGATCTGCCTTTGCAAAATTGAAGAAGGGAAGAAGTGTAGAAGGATGAGCACGTGCGATCACATGTTTCATAGAGATTGCATTGACCGATGGCTTACGATGGATTGGTGGTTTATAGTAAACAGTAGTTGTCCACTTTGTCGAGCTGCCATTTGTGTGGTGGTTTGA

Coding sequence (CDS)

ATGATCTGCCTTTGCAAAATTGAAGAAGGGAAGAAGTGTAGAAGGATGAGCACGTGCGATCACATGTTTCATAGAGATTGCATTGACCGATGGCTTACGATGGATTGGTGGTTTATAGTAAACAGTAGTTGTCCACTTTGTCGAGCTGCCATTTGTGTGGTGGTTTGA

Protein sequence

MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV

Homology

[Close]

BLAST of CsaV3_1G034250.1 vs. NCBI nr
Match: XP_011659858.1 (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF VN  CP+CR ++CVVV
Sbjct: 80  ICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVNGHCPICRTSVCVVV 127

[Close]

BLAST of CsaV3_1G034250.1 vs. NCBI nr
Match: KGN65715.1 (hypothetical protein Csa_1G512470 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1   MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           +ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF VN  CP+CR ++C+VV
Sbjct: 58  VICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVNGHCPICRTSVCMVV 106

[Close]

BLAST of CsaV3_1G034250.1 vs. NCBI nr
Match: XP_011648512.1 (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1   MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           +ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF VN  CP+CR ++C+VV
Sbjct: 79  VICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVNGHCPICRTSVCMVV 127

[Close]

BLAST of CsaV3_1G034250.1 vs. NCBI nr
Match: KGN44779.1 (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-13
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF V+  CP+CR ++CVVV
Sbjct: 90  ICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVDGHCPICRTSVCVVV 137

[Close]

BLAST of CsaV3_1G034250.1 vs. NCBI nr
Match: XP_004153928.2 (PREDICTED: RING-H2 finger protein ATL44-like [Cucumis sativus] >KGN65722.1 hypothetical protein Csa_1G521990 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-13
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF V+  CP+CR ++CVVV
Sbjct: 55  ICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVDDHCPICRTSVCVVV 102

[Close]

BLAST of CsaV3_1G034250.1 vs. TAIR10
Match: AT3G60966.1 (RING/U-box superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-09
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAI 52
           +CL + EEG+K RR++ C H FH DCID WL+        S CPLCRA I
Sbjct: 64  VCLQEAEEGEKMRRLTICRHCFHADCIDTWLS------EMSKCPLCRAQI 107

[Close]

BLAST of CsaV3_1G034250.1 vs. TAIR10
Match: AT3G14320.1 (Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-09
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICV 54
           ++CL ++ +G K R + +CDH FH +CID WL        NS+CP+CR  +C+
Sbjct: 89  VVCLSELADGDKARVLPSCDHWFHVECIDSWLQS------NSTCPICRKRVCL 135

[Close]

BLAST of CsaV3_1G034250.1 vs. TAIR10
Match: AT1G23980.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-09
Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAI 52
           +CLC+  E  K R +  C H FH DCID WL      + NS+CPLCR  +
Sbjct: 146 VCLCEFSEDDKLRLLPNCSHAFHIDCIDTWL------LSNSTCPLCRGTL 189

[Close]

BLAST of CsaV3_1G034250.1 vs. TAIR10
Match: AT2G44578.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-09
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAI 52
           ICL    EG+K RR++ C H FH DCID WL      +  S+CPLCRA I
Sbjct: 72  ICLEDAAEGEKMRRITACSHCFHVDCIDPWL------MKKSTCPLCRAEI 115

[Close]

BLAST of CsaV3_1G034250.1 vs. TAIR10
Match: AT2G44581.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-08
Identity = 26/50 (52.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAI 52
           ICL    EG+K RR++ C H FH DCID WL         S CPLCRA I
Sbjct: 72  ICLENATEGEKMRRIAACSHCFHVDCIDPWLEK------KSMCPLCRAEI 115

[Close]

BLAST of CsaV3_1G034250.1 vs. Swiss-Prot
Match: sp|Q9P7E1|YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-08
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 1   MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCR 49
           ++CL   E   +CRR+  C+H FHR+CID+WLT        +SCPLCR
Sbjct: 526 LVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSS-----QNSCPLCR 568

[Close]

BLAST of CsaV3_1G034250.1 vs. Swiss-Prot
Match: sp|Q9LUL6|ATL61_ARATH (Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-08
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICV 54
           ++CL ++ +G K R + +CDH FH +CID WL        NS+CP+CR  +C+
Sbjct: 89  VVCLSELADGDKARVLPSCDHWFHVECIDSWLQS------NSTCPICRKRVCL 135

[Close]

BLAST of CsaV3_1G034250.1 vs. Swiss-Prot
Match: sp|Q8GW38|ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-07
Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAI 52
           +CLC+  E  K R +  C H FH DCID WL      + NS+CPLCR  +
Sbjct: 146 VCLCEFSEDDKLRLLPNCSHAFHIDCIDTWL------LSNSTCPLCRGTL 189

[Close]

BLAST of CsaV3_1G034250.1 vs. Swiss-Prot
Match: sp|P87237|YC0C_SCHPO (Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC4G3.12c PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-07
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 1   MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRA 50
           +ICL     G  CR++  C H FH+ CID+WLT       N+SCPLCRA
Sbjct: 767 LICLETYTNGDICRKLQACKHFFHQACIDQWLTTG-----NNSCPLCRA 810

[Close]

BLAST of CsaV3_1G034250.1 vs. Swiss-Prot
Match: sp|Q940Q4|ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-07
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAI 52
           +CLC+ E   K R +  C H FH DCID WL      + +S+CPLCR+++
Sbjct: 136 VCLCEFETEDKLRLLPKCSHAFHMDCIDTWL------LSHSTCPLCRSSL 179

[Close]

BLAST of CsaV3_1G034250.1 vs. TrEMBL
Match: tr|A0A0A0LUU6|A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1   MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           +ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF VN  CP+CR ++C+VV
Sbjct: 58  VICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVNGHCPICRTSVCMVV 106

[Close]

BLAST of CsaV3_1G034250.1 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-13
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF V+  CP+CR ++CVVV
Sbjct: 90  ICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVDGHCPICRTSVCVVV 137

[Close]

BLAST of CsaV3_1G034250.1 vs. TrEMBL
Match: tr|A0A0A0LY13|A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G521990 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-13
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           ICLC+IEEG+KCR+M TC H+FH+DCIDR      WF V+  CP+CR ++CVVV
Sbjct: 55  ICLCEIEEGEKCRKMKTCGHVFHKDCIDR------WFKVDDHCPICRTSVCVVV 102

[Close]

BLAST of CsaV3_1G034250.1 vs. TrEMBL
Match: tr|A0A1S3C6H2|A0A1S3C6H2_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 2   ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
           ICLC+IEEG+KCR++ TC H+FH+DCIDR      WF V   CPLCR ++CVVV
Sbjct: 91  ICLCEIEEGEKCRKIKTCGHVFHKDCIDR------WFTVELHCPLCRTSVCVVV 138

[Close]

BLAST of CsaV3_1G034250.1 vs. TrEMBL
Match: tr|A0A1S3C5E4|A0A1S3C5E4_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497234 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 2  ICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV 56
          ICLC+IEEG+KCR+M  C H+FH+DCIDR      WF V   CPLCR ++CVVV
Sbjct: 52 ICLCEIEEGEKCRKMKMCGHVFHKDCIDR------WFTVELHCPLCRTSVCVVV 99

The following BLAST results are available for this feature:

BLAST of CsaV3_1G034250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659858.1	2.4e-13	62.96	PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
KGN65715.1	4.1e-13	60.00	hypothetical protein Csa_1G512470 [Cucumis sativus]	[more]
XP_011648512.1	4.1e-13	60.00	PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]	[more]
KGN44779.1	9.0e-13	61.11	hypothetical protein Csa_7G387140 [Cucumis sativus]	[more]
XP_004153928.2	9.0e-13	61.11	PREDICTED: RING-H2 finger protein ATL44-like [Cucumis sativus] >KGN65722.1 hypot...	[more]

BLAST of CsaV3_1G034250.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60966.1	1.9e-09	52.00	RING/U-box superfamily protein	[more]
AT3G14320.1	3.3e-09	41.51	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT1G23980.1	5.7e-09	46.00	RING/U-box superfamily protein	[more]
AT2G44578.1	9.6e-09	52.00	RING/U-box superfamily protein	[more]
AT2G44581.1	1.6e-08	52.00	RING/U-box superfamily protein	[more]

BLAST of CsaV3_1G034250.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9P7E1\|YOF7_SCHPO	1.6e-08	47.92	Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strai...	[more]
sp\|Q9LUL6\|ATL61_ARATH	6.0e-08	41.51	Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 P...	[more]
sp\|Q8GW38\|ATL47_ARATH	1.0e-07	46.00	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
sp\|P87237\|YC0C_SCHPO	1.0e-07	48.98	Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strai...	[more]
sp\|Q940Q4\|ATL13_ARATH	3.0e-07	44.00	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]

BLAST of CsaV3_1G034250.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUU6\|A0A0A0LUU6_CUCSA	2.7e-13	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1	[more]
tr\|A0A0A0K790\|A0A0A0K790_CUCSA	6.0e-13	61.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1	[more]
tr\|A0A0A0LY13\|A0A0A0LY13_CUCSA	6.0e-13	61.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G521990 PE=4 SV=1	[more]
tr\|A0A1S3C6H2\|A0A1S3C6H2_CUCME	1.3e-12	61.11	RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 S...	[more]
tr\|A0A1S3C5E4\|A0A1S3C5E4_CUCME	2.3e-12	61.11	RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497234 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G034250	CsaV3_1G034250	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G034250.1.cds1	CsaV3_1G034250.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G034250.1.exon1	CsaV3_1G034250.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G034250.1	CsaV3_1G034250.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 1..53 e-value: 4.9E-14 score: 53.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 1..48 e-value: 3.5E-9 score: 36.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 2..48 score: 10.483
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 2..49
None	No IPR available	PANTHER	PTHR14155:SF318	SUBFAMILY NOT NAMED	coord: 2..49
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 2..53