CsaV3_1G034250 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGCTTTTAGTCTTCACGTTTCTCTTCACTTTACTATGTTTCTACCTTATCACTCTAGACAGTGAAAGAGTTGTCAAATCTAATCGCAAAAAGTTGCTTGAGACTTTAGAGATTGAAGTACCAAATTTTAGTTAGTACGGAGATGACGACGACAATCAGACAAATTGTATGATCTGCCTTTGCAAAATTGAAGAAGGGAAGAAGTGTAGAAGGATGAGCACGTGCGATCACATGTTTCATAGAGATTGCATTGACCGATGGCTTACGATGGATTGGTGGTTTATAGTAAACAGTAGTTGTCCACTTTGTCGAGCTGCCATTTGTGTGGTGGTTTGATTAGATTAGTAGTGATGAAAATATAACGAGAAATGACTAGAAATAGGAATTGGGGGTGGAGCCTTATTTGATTGTTTTTAAATTTATTATGAACCTATCACTAAAAATTACATTAATATATGTTGGATCGGTATGGCAACCCTAGAGGGGGG ATGATCTGCCTTTGCAAAATTGAAGAAGGGAAGAAGTGTAGAAGGATGAGCACGTGCGATCACATGTTTCATAGAGATTGCATTGACCGATGGCTTACGATGGATTGGTGGTTTATAGTAAACAGTAGTTGTCCACTTTGTCGAGCTGCCATTTGTGTGGTGGTTTGA ATGATCTGCCTTTGCAAAATTGAAGAAGGGAAGAAGTGTAGAAGGATGAGCACGTGCGATCACATGTTTCATAGAGATTGCATTGACCGATGGCTTACGATGGATTGGTGGTTTATAGTAAACAGTAGTTGTCCACTTTGTCGAGCTGCCATTTGTGTGGTGGTTTGA MICLCKIEEGKKCRRMSTCDHMFHRDCIDRWLTMDWWFIVNSSCPLCRAAICVVV
BLAST of CsaV3_1G034250 vs. NCBI nr
Match: XP_011659858.1 (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]) HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13 Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. NCBI nr
Match: KGN65715.1 (hypothetical protein Csa_1G512470 [Cucumis sativus]) HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13 Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. NCBI nr
Match: XP_011648512.1 (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]) HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13 Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. NCBI nr
Match: KGN44779.1 (hypothetical protein Csa_7G387140 [Cucumis sativus]) HSP 1 Score: 81.6 bits (200), Expect = 9.0e-13 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. NCBI nr
Match: XP_004153928.2 (PREDICTED: RING-H2 finger protein ATL44-like [Cucumis sativus] >KGN65722.1 hypothetical protein Csa_1G521990 [Cucumis sativus]) HSP 1 Score: 81.6 bits (200), Expect = 9.0e-13 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TAIR10
Match: AT3G60966.1 (RING/U-box superfamily protein) HSP 1 Score: 58.2 bits (139), Expect = 1.9e-09 Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TAIR10
Match: AT3G14320.1 (Zinc finger, C3HC4 type (RING finger) family protein) HSP 1 Score: 57.4 bits (137), Expect = 3.3e-09 Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TAIR10
Match: AT1G23980.1 (RING/U-box superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 5.7e-09 Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TAIR10
Match: AT2G44578.1 (RING/U-box superfamily protein) HSP 1 Score: 55.8 bits (133), Expect = 9.6e-09 Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TAIR10
Match: AT2G44581.1 (RING/U-box superfamily protein) HSP 1 Score: 55.1 bits (131), Expect = 1.6e-08 Identity = 26/50 (52.00%), Postives = 29/50 (58.00%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. Swiss-Prot
Match: sp|Q9P7E1|YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 1.6e-08 Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. Swiss-Prot
Match: sp|Q9LUL6|ATL61_ARATH (Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 6.0e-08 Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. Swiss-Prot
Match: sp|Q8GW38|ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.0e-07 Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. Swiss-Prot
Match: sp|P87237|YC0C_SCHPO (Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC4G3.12c PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.0e-07 Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. Swiss-Prot
Match: sp|Q940Q4|ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 3.0e-07 Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TrEMBL
Match: tr|A0A0A0LUU6|A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.7e-13 Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.0e-13 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TrEMBL
Match: tr|A0A0A0LY13|A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G521990 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.0e-13 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TrEMBL
Match: tr|A0A1S3C6H2|A0A1S3C6H2_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12 Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0
BLAST of CsaV3_1G034250 vs. TrEMBL
Match: tr|A0A1S3C5E4|A0A1S3C5E4_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497234 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |