CsaV3_1G032840.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G032840.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 19919282 .. 19919486 (+)
Sequence length203
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTACTGGAATGCATGGGTCATTTGGCTTCTATGAAGTGGTCATGAATCTCCTGAACATGAAAATTATTATCCACATTCAACCATGCCTGGACATAACCTGTGATGAGACACTGTACAAAACCTTATTGGAACAAAGTAGTTTGTCAAGGTCGTCGTTCGTATGTGGATATAAGTTGAAACCTTTTGAACCGTACAAATCTTGA

mRNA sequence

TTTACTGGAATGCATGGGTCATTTGGCTTCTATGAAGTGGTCATGAATCTCCTGAACATGAAAATTATTATCCACATTCAACCATGCCTGGACATAACCTGTGATGAGACACTGTACAAAACCTTATTGGAACAAAGTAGTTTGTCAAGGTCGTCGTTCGTATGTGGATATAAGTTGAAACCTTTTGAACCGTACAAATCTTG

Coding sequence (CDS)

TTTACTGGAATGCATGGGTCATTTGGCTTCTATGAAGTGGTCATGAATCTCCTGAACATGAAAATTATTATCCACATTCAACCATGCCTGGACATAACCTGTGATGAGACACTGTACAAAACCTTATTGGAACAAAGTAGTTTGTCAAGGTCGTCGTTCGTATGTGGATATAAGTTGAAACCTTTTGAACCGTACAAATCTTG

Protein sequence

FTGMHGSFGFYEVVMNLLNMKIIIHIQPCLDITCDETLYKTLLEQSSLSRSSFVCGYKLKPFEPYKSX
Homology
[Close]
BLAST of CsaV3_1G032840.1 vs. NCBI nr
Match: KGN54676.1 (hypothetical protein Csa_4G420170 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 12 EVVMNLLNMKIIIHIQPCLDITCDETLYKTLLEQSSLSR-SSFVCGYKLKPFEPYKS 68
          +V+++LLNM++I+H QP +DIT DETLYKTLLEQS+LSR S         PFEPY+S
Sbjct: 2  KVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYMDASWNPFEPYRS 58

[Close]
BLAST of CsaV3_1G032840.1 vs. TrEMBL
Match: tr|A0A0A0L3G1|A0A0A0L3G1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420170 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 12 EVVMNLLNMKIIIHIQPCLDITCDETLYKTLLEQSSLSR-SSFVCGYKLKPFEPYKS 68
          +V+++LLNM++I+H QP +DIT DETLYKTLLEQS+LSR S         PFEPY+S
Sbjct: 2  KVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYMDASWNPFEPYRS 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G032840.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54676.12.1e-0859.65hypothetical protein Csa_4G420170 [Cucumis sativus][more]
BLAST of CsaV3_1G032840.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032840.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032840.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3G1|A0A0A0L3G1_CUCSA1.4e-0859.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420170 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G032840CsaV3_1G032840gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G032840.1.exon1CsaV3_1G032840.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G032840.1.cds1CsaV3_1G032840.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G032840.1CsaV3_1G032840.1-proteinpolypeptide